Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A01f
         (394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   0.54 
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   2.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   8.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   8.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 0.54
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 71  ITTKVPPTSHTGMPSSLVSTGTP 139
           IT + PP  HT      VS GTP
Sbjct: 608 ITIQEPPQWHTRSTEKRVSAGTP 630


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 46  PRTGHLGPALLYP 8
           PR  H+GP+ L+P
Sbjct: 139 PRFRHIGPSTLFP 151


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 202 VKVVNYNHLMPTRYTV 249
           V V+N++H  P RY +
Sbjct: 344 VLVLNFHHRTPDRYVM 359


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 202 VKVVNYNHLMPTRYTV 249
           V V+N++H  P RY +
Sbjct: 344 VLVLNFHHRTPDRYVM 359


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -3

Query: 179 LWILFFPILLCTFRGYLSIPATKA 108
           +W+ F P+ L  +  +  I A  A
Sbjct: 222 IWVYFVPLFLIIYSYWFIIQAVAA 245


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -3

Query: 179 LWILFFPILLCTFRGYLSIPATKA 108
           +W+ F P+ L  +  +  I A  A
Sbjct: 98  IWVYFVPLFLIIYSYWFIIQAVAA 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,926
Number of Sequences: 438
Number of extensions: 2474
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)