Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302A01f
(394 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 115 1e-26
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi... 114 2e-26
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C) 114 2e-26
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 29 0.85
At4g34630.1 68417.m04918 expressed protein 29 1.1
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 29 1.5
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 29 1.5
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam... 27 3.4
At5g12000.1 68418.m01403 protein kinase family protein contains ... 27 3.4
At1g50820.1 68414.m05715 hypothetical protein 27 4.5
At5g52090.1 68418.m06466 tRNA-splicing endonuclease positive eff... 27 6.0
At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive eff... 27 6.0
At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138... 27 6.0
>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)
Length = 135
Score = 115 bits (277), Expect = 1e-26
Identities = 47/94 (50%), Positives = 68/94 (72%)
Frame = +1
Query: 1 MKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHK 180
MKPGK V++L GRY G+KA++VK++D+GT +K YGH VAG+ +YP KV ++ K K
Sbjct: 5 MKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAKKTAK 64
Query: 181 RSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD 282
+S++K F KV+NY H+MPTRYT+D + + D
Sbjct: 65 KSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSAD 98
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/22 (68%), Positives = 20/22 (90%)
Frame = +2
Query: 326 RVRFEERYKSGKNKWFFXKLRF 391
+ +FEER+K+GKN+WFF KLRF
Sbjct: 114 KAKFEERFKTGKNRWFFTKLRF 135
>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
tuberosum]
Length = 135
Score = 114 bits (275), Expect = 2e-26
Identities = 46/94 (48%), Positives = 70/94 (74%)
Frame = +1
Query: 1 MKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHK 180
+K K V++L GRYAG+KA+++K++D+GTSD+ YGH VAG+ +YP KV ++ K K
Sbjct: 5 LKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAKKTAK 64
Query: 181 RSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD 282
+S++K F+K+VNY HLMPTRYT+D ++ + D
Sbjct: 65 KSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLD 98
Score = 39.9 bits (89), Expect = 6e-04
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +2
Query: 326 RVRFEERYKSGKNKWFFXKLRF 391
+ + EER+K+GKN+WFF KLRF
Sbjct: 114 KAKLEERFKTGKNRWFFTKLRF 135
>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
Length = 135
Score = 114 bits (274), Expect = 2e-26
Identities = 45/94 (47%), Positives = 69/94 (73%)
Frame = +1
Query: 1 MKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHK 180
+K K V++L GRYAG+KA+++K++D+G D+PYGH VAG+ +YP KV ++ K K
Sbjct: 5 LKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAK 64
Query: 181 RSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD 282
+S++K F+K+VNY HLMPTRYT+D ++ + D
Sbjct: 65 KSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLD 98
Score = 39.9 bits (89), Expect = 6e-04
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +2
Query: 326 RVRFEERYKSGKNKWFFXKLRF 391
+ + EER+K+GKN+WFF KLRF
Sbjct: 114 KAKLEERFKTGKNRWFFTKLRF 135
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 29.5 bits (63), Expect = 0.85
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 7 PGKVVLVLSGRYAGRKAIVVKNYDEG 84
PG V+++L+GR+ G++ + +K G
Sbjct: 91 PGTVLIILAGRFKGKRVVFLKQLSSG 116
>At4g34630.1 68417.m04918 expressed protein
Length = 199
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 76 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 189
D+G D+ Y ++ + PR V K++G+ ++ K K
Sbjct: 130 DDGEEDREYDDSYDLDEELVPRSVSKKVGRQRMRKLGK 167
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 28.7 bits (61), Expect = 1.5
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 7 PGKVVLVLSGRYAGRKAIVVKNYDEG 84
PG V+++L+GR+ G++ + +K G
Sbjct: 91 PGTVLIILAGRFKGKRVVFLKQLASG 116
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 28.7 bits (61), Expect = 1.5
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 7 PGKVVLVLSGRYAGRKAIVVKNYDEG 84
PG V+++L+GR+ G++ + +K G
Sbjct: 91 PGTVLIILAGRFKGKRVVFLKQLASG 116
>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 557
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 317 FXTRVRFEERYKSGKNKWFF 376
+ R + E+RYKS K KWF+
Sbjct: 58 YNKRNKKEQRYKSPKGKWFY 77
>At5g12000.1 68418.m01403 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 703
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 127 DRYPRKVHKRMGKNKIHKR-SKIKPFVKVVNYNHLMPTRYTVDFSFE 264
DR PR +R G+N + +R S K V H +PT ++DF++E
Sbjct: 188 DRSPRS--QRNGRNTVPERYSHENKGFKPVREMHKIPTNGSLDFNYE 232
>At1g50820.1 68414.m05715 hypothetical protein
Length = 528
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 63 SQELRRRYLRQAIRACLRRWYRQVPPESAQED 158
S RR+Y++QA R + +QVP ++ ++D
Sbjct: 476 STNKRRKYMKQAHRGTMGLCQKQVPSDNDEDD 507
>At5g52090.1 68418.m06466 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 676
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 106 HAFVAGID-RYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD 282
HA + G + + P VH M + RS + V + + HL+ +Y + S +F K+
Sbjct: 391 HAILIGDEFQLPAMVHNEMCEKAKFGRSLFERLVLLGHNKHLLDVQYRMHPSISRFPNKE 450
>At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 839
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 106 HAFVAGID-RYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD 282
HA + G + + P VH M + RS + V + + HL+ +Y + S +F K+
Sbjct: 554 HAILIGDEFQLPAMVHNEMCEKAKFGRSLFERLVLLGHNKHLLDVQYRMHPSISRFPNKE 613
>At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'growth regulator protein -related' based on similarity
to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.
Length = 499
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 204 DERLYLGPLVDFILSHPLVHFPGVPVDTSDEGMPVWL 94
DE+ YL ++ H +VHF ++ G+P+ L
Sbjct: 186 DEKYYLKQVLPLFSKHKVVHFNRTDTRLANNGLPLSL 222
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,396,993
Number of Sequences: 28952
Number of extensions: 162038
Number of successful extensions: 489
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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