Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301H11f
(366 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 125 2e-30
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 0.52
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 28 0.52
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 0.69
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 1.6
SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|... 26 2.1
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 2.1
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 25 2.8
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 3.7
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac... 25 3.7
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 24 6.4
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 24 8.5
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 24 8.5
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 24 8.5
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 24 8.5
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 24 8.5
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 125 bits (302), Expect = 2e-30
Identities = 60/87 (68%), Positives = 75/87 (86%)
Frame = +1
Query: 103 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLAL 282
LYPIAVLIDELK++++ RLN++++LSTIALALG ERT+ ELIPFL E+I DEDEVL AL
Sbjct: 10 LYPIAVLIDELKHDEITYRLNALERLSTIALALGPERTRDELIPFLDESIDDEDEVLSAL 69
Query: 283 AEQLGSFINLVGGGEFAHCLLPPLETL 363
A+QLG+F++ VGG E+AH LL PLE L
Sbjct: 70 ADQLGNFVDYVGGPEYAHVLLSPLENL 96
Score = 36.3 bits (80), Expect = 0.001
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +1
Query: 103 LYPIAVLIDELKNEDVQ-LRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-EVLL 276
L I +I EL N+ Q +R + +A LG E+T L+P E + DE+ EV L
Sbjct: 321 LEEIIPVIQELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRL 380
Query: 277 ALAEQLGSFINLVGGGEFAHCLLPPLETL 363
+ +L +VG + LLP + TL
Sbjct: 381 NIISKLEVVNKVVGIELLSQSLLPAIVTL 409
Score = 35.9 bits (79), Expect = 0.002
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 106 YPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-EVLLAL 282
Y + + ++ LK+E+ ++RLN I KL + +G+E L+P + D+ V LA+
Sbjct: 362 YLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRVRLAI 421
Query: 283 AEQL 294
+ +
Sbjct: 422 IDYI 425
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 27.9 bits (59), Expect = 0.52
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +1
Query: 64 IKMAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVER 213
+ + SD TDES++P+ + +++++D + +S L + A+A G +
Sbjct: 56 VNYSMSDE-TDESMFPLDSELTDMEDDDTEYISDSTTDLPSAAMARGTRQ 104
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.9 bits (59), Expect = 0.52
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 166 SIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGSFINLV 315
SIKK T + G+E +S ++ F + DE L+ Q+ S +NL+
Sbjct: 138 SIKKEGTQVIVFGIETVRSMVLSFPLIILSTLDENFLSEVAQVFSSLNLL 187
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.5 bits (58), Expect = 0.69
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +1
Query: 130 ELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGS 300
EL+NE +Q LNS K L T L E ++L+ FL T + E + +L QL +
Sbjct: 295 ELENEKIQTELNSWKSLITNELPT-PEAVSNKLV-FLQNTNANLGERVSSLESQLSN 349
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.2 bits (55), Expect = 1.6
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 160 LNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGS-FINLVGGGEFAH 336
+NS KK + + V T E IPF + D+ A+ L F NLV GE A+
Sbjct: 595 VNSQKKTAPEVSPISV--TLIEQIPFFLQKRDISDDSKDAVLSWLSDLFSNLVCTGEDAN 652
Query: 337 CLLPPLETL 363
CL LE +
Sbjct: 653 CLFHLLENV 661
>SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 2.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -1
Query: 210 LHAQSQRDRRQLLYR---VQTKLYILILQLIYENGNRIQ*FIRPG 85
LH Q R L Y+ + T+LY +L+ Y +GN I + +PG
Sbjct: 52 LHHQRSRYIYDLYYKREAISTELYNWLLKQNYADGNLIAKWKKPG 96
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 2.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 187 IALALGVERTKSELIPFLTETIYDEDEVL 273
+ L +E+ K E++PFL Y +EVL
Sbjct: 473 LVLKSSIEKEKVEIVPFLDIRKYSPNEVL 501
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 25.4 bits (53), Expect = 2.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 231 DQLRFSPLHAQSQRDRRQLLYRVQTKLYI 145
D +F+P S R+ LLYR++ KL +
Sbjct: 153 DNEKFNPEVISSLASRQDLLYRIRDKLLV 181
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.0 bits (52), Expect = 3.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 234 RDQLRFSPLHAQSQRDRRQLLYRVQ 160
RD+L F +A+ +RD R L R+Q
Sbjct: 578 RDELNFDQPNAEQERDIRDLQERLQ 602
>SPCC4G3.08 |psk1||serine/threonine protein kinase
Psk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 3.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 118 VLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSE 225
VL+ + KN +KK S + A G+E+TK+E
Sbjct: 105 VLLVKQKNTGRLFAQKQLKKASIVLRAKGLEQTKNE 140
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 24.2 bits (50), Expect = 6.4
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 130 ELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDE 261
+L NE + + +K+ T+ LAL ++ K+++ LT+ +DE
Sbjct: 970 DLGNE-INSEIGFLKEPDTMNLALDADKDKTKMQNKLTQINFDE 1012
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 23.8 bits (49), Expect = 8.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 166 SIKKLSTIALALGVERTKSELIPFLTETI 252
S+ KLS I+ +GVE +E + F+ E+I
Sbjct: 298 SLVKLSGISSLMGVESYLAERLRFIGESI 326
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 23.8 bits (49), Expect = 8.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 160 NEAVHPHSSAHL*ERQSDTMIHPSRSRSLPF 68
+E VHP + L DT IH S + PF
Sbjct: 61 SETVHPENEKALTPDLRDTKIHTSLPITTPF 91
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 23.8 bits (49), Expect = 8.5
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 121 LIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDE 267
L+ L++E +R++ + LS I R +EL+P L I+D E
Sbjct: 364 LLTSLQSELPDVRVSIDEALSIIIPYYSNFRFSNELLPVLEPFIFDSPE 412
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 23.8 bits (49), Expect = 8.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 247 TIYDEDEVLLALAEQLGSFIN 309
TIY D +LLA+ L +++N
Sbjct: 209 TIYHADTILLAVGAYLNAYLN 229
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 23.8 bits (49), Expect = 8.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 172 KKLSTIALALGVERTKSELIPFLTETIYDEDEVLLA 279
K L T+ L + K+E+ + T+Y+EDEVL A
Sbjct: 172 KSLFTLRQPLFFQPRKTEIC--IAITMYNEDEVLFA 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,260,549
Number of Sequences: 5004
Number of extensions: 19591
Number of successful extensions: 79
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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