Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H11f
         (366 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370...   138   9e-34
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053...    31   0.37 
04_04_1476 - 33863067-33863148,33863239-33863310,33863393-338634...    28   2.0  
09_04_0355 + 16922863-16924224                                         27   4.5  

>09_02_0058 -
           3704138-3704257,3704355-3704421,3704502-3704641,
           3705332-3705424,3705927-3706109,3706491-3706595,
           3706738-3706818,3706905-3707046,3707207-3707286,
           3707456-3707568,3708051-3708297,3708659-3709051
          Length = 587

 Score =  138 bits (335), Expect = 9e-34
 Identities = 69/90 (76%), Positives = 77/90 (85%)
 Frame = +1

Query: 94  DESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVL 273
           DE LYPIA+LIDELKNED+QLRLNSI++LSTIA ALG ERT+ ELIPFL+E   DEDEVL
Sbjct: 5   DEPLYPIAILIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDEDEVL 64

Query: 274 LALAEQLGSFINLVGGGEFAHCLLPPLETL 363
           LA+AE+LG FI  VGG E AH LLPPLETL
Sbjct: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETL 94



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +1

Query: 91  TDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-E 267
           T E L PI + +  LK+E   +RLN I KL  +   +G++     L+P + E   D    
Sbjct: 355 TIEQLLPIFLSL--LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 412

Query: 268 VLLALAEQLGSFINLVGGGEF 330
           V LA+ E +    + +G G F
Sbjct: 413 VRLAIIEYIPLLASQLGVGFF 433


>02_05_1074 -
           33904518-33904697,33904886-33904985,33905085-33905311,
           33905511-33908384,33908467-33908643,33908786-33909008,
           33909727-33909806,33910657-33910817,33910892-33910937,
           33911129-33911251,33911730-33911804,33911920-33912120
          Length = 1488

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 91  TDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEV 270
           T++ L PI      L + D QLR     ++  +   +G    +  L+P+L + + DE EV
Sbjct: 742 TNDFLLPILPAF--LNDRDEQLRAVYFGQIVVVCYFIGSRSVEEYLLPYLEQALSDEMEV 799

Query: 271 LL 276
           +L
Sbjct: 800 VL 801


>04_04_1476 -
           33863067-33863148,33863239-33863310,33863393-33863472,
           33863549-33863611,33863837-33863924,33864277-33864339,
           33864421-33864494,33864683-33864732,33866126-33866295,
           33867041-33867120
          Length = 273

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 258 IIDCLSEERDQLRFSPL-HAQSQRDRRQLLYRVQT 157
           I+DCLS+  D    SP+ H   +  R+ L+Y V T
Sbjct: 101 ILDCLSKSSDSDHSSPVEHLSCRSSRKTLIYLVLT 135


>09_04_0355 + 16922863-16924224
          Length = 453

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 82  DSGTDESLYPIAVLIDELKNEDVQLRL 162
           DSGT  +L+P+AVL + ++    QLRL
Sbjct: 326 DSGTALTLFPVAVLAEVVRAFRSQLRL 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,221,370
Number of Sequences: 37544
Number of extensions: 124960
Number of successful extensions: 377
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)