Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301H11f
(366 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25800.1 68416.m03211 serine/threonine protein phosphatase 2A... 138 1e-33
At1g25490.1 68414.m03165 serine/threonine protein phosphatase 2A... 138 1e-33
At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A... 133 4e-32
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r... 28 2.2
At3g56650.1 68416.m06299 thylakoid lumenal 20 kDa protein SP:Q9L... 27 2.9
At1g29740.1 68414.m03636 leucine-rich repeat family protein / pr... 27 5.0
At3g31540.1 68416.m04025 hypothetical protein 26 6.7
At2g02835.1 68415.m00229 hypothetical protein 26 6.7
At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing ... 26 8.8
At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ... 26 8.8
At2g35950.1 68415.m04413 expressed protein 26 8.8
At1g23205.1 68414.m02900 invertase/pectin methylesterase inhibit... 26 8.8
>At3g25800.1 68416.m03211 serine/threonine protein phosphatase 2A
(PP2A) 65 KDa regulatory subunit A identical to protein
phosphatase 2A 65 kDa regulatory subunit (pDF1)
GI:683502 from [Arabidopsis thaliana]
Length = 587
Score = 138 bits (334), Expect = 1e-33
Identities = 68/90 (75%), Positives = 78/90 (86%)
Frame = +1
Query: 94 DESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVL 273
DE LYPIAVLIDELKN+D+QLRLNSI++LSTIA ALG ERT+ ELIPFL+E D+DEVL
Sbjct: 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
Query: 274 LALAEQLGSFINLVGGGEFAHCLLPPLETL 363
LA+AE+LG FI VGG E+AH LLPPLETL
Sbjct: 65 LAMAEELGVFIPYVGGVEYAHVLLPPLETL 94
Score = 37.5 bits (83), Expect = 0.003
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +1
Query: 91 TDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-E 267
T E L PI + + LK+E +RLN I KL + +G++ L+P + E D
Sbjct: 355 TIEHLLPIFLSL--LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 412
Query: 268 VLLALAEQLGSFINLVGGGEF 330
V LA+ E + + +G G F
Sbjct: 413 VRLAIIEYIPLLASQLGVGFF 433
>At1g25490.1 68414.m03165 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit A (RCN1) identical to
phosphoprotein phosphatase 2A, regulatory subunit A
GI:1262171 from [Arabidopsis thaliana]
Length = 588
Score = 138 bits (334), Expect = 1e-33
Identities = 68/90 (75%), Positives = 78/90 (86%)
Frame = +1
Query: 94 DESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVL 273
DE LYPIAVLIDELKN+D+QLRLNSI++LSTIA ALG ERT+ ELIPFL+E D+DEVL
Sbjct: 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENSDDDDEVL 64
Query: 274 LALAEQLGSFINLVGGGEFAHCLLPPLETL 363
LA+AE+LG FI VGG EFAH LLPPLE+L
Sbjct: 65 LAMAEELGVFIPFVGGIEFAHVLLPPLESL 94
Score = 36.7 bits (81), Expect = 0.005
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +1
Query: 91 TDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-E 267
T E L PI + + LK+E +RLN I KL + +G++ L+P + E D
Sbjct: 355 TIEHLLPIFLSL--LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 412
Query: 268 VLLALAEQLGSFINLVGGGEF 330
V LA+ E + + +G G F
Sbjct: 413 VRLAIIEYVPLLASQLGIGFF 433
>At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A
(PP2A) 65 kDa regulatory subunit, putative similar to
protein phosphatase 2A 65 kDa regulatory subunit
GI:683502 from [Arabidopsis thaliana]
Length = 587
Score = 133 bits (321), Expect = 4e-32
Identities = 67/93 (72%), Positives = 77/93 (82%)
Frame = +1
Query: 85 SGTDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED 264
S DE LYPIAVLIDELKN+D+Q RLNSIK+LS IA ALG ERT+ ELIPFL+E D+D
Sbjct: 2 SMVDEPLYPIAVLIDELKNDDIQRRLNSIKRLSIIARALGEERTRKELIPFLSENNDDDD 61
Query: 265 EVLLALAEQLGSFINLVGGGEFAHCLLPPLETL 363
EVLLA+AE+LG FI VGG E+A+ LLPPLETL
Sbjct: 62 EVLLAMAEELGGFILYVGGVEYAYVLLPPLETL 94
Score = 37.5 bits (83), Expect = 0.003
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +1
Query: 91 TDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-E 267
T E L PI + + LK+E +RLN I KL + +G++ L+P + E D
Sbjct: 355 TIEHLLPIFLSL--LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 412
Query: 268 VLLALAEQLGSFINLVGGGEF 330
V LA+ E + + +G G F
Sbjct: 413 VRLAIIEYIPLLASQLGVGFF 433
>At4g29380.1 68417.m04197 protein kinase family protein / WD-40
repeat family protein contains Pfam PF00400: WD domain,
G-beta repeat; contains Pfam PF00069: Protein kinase
domain; contains PF02985: HEAT repeat; similar to
adaptor protein (GI:1817584) [Homo sapiens]; similar to
VPS15 protein (GI:6103009) [Pichia pastoris]
Length = 1494
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +1
Query: 133 LKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALA 285
L + D QLR +K+ + +G + L+P++ + + D+ E ++ A
Sbjct: 661 LNDRDEQLRSVFFEKIVYVCFFVGQRSVEEYLLPYIDQALSDQTEAVIVNA 711
>At3g56650.1 68416.m06299 thylakoid lumenal 20 kDa protein
SP:Q9LXX5; PMID:11719511; F22K20.16 - Arabidopsis
thaliana, EMBL:AC002291;
Length = 262
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 208 ERTKSELIPFLTETIYDEDEVLLALAEQLG 297
E+ + L PF+T YD DE+L E++G
Sbjct: 174 EKVIASLGPFVTGNSYDSDELLKTSIEKIG 203
>At1g29740.1 68414.m03636 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1049
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 100 SLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVL 273
S+ + L+ + + L + ++ L IAL LGV+ P LT+T+ +VL
Sbjct: 21 SVLTLIYLVCTVLSASPSLHPDEVEALKDIALTLGVKHLNLSEDPCLTKTLVITQDVL 78
>At3g31540.1 68416.m04025 hypothetical protein
Length = 699
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 286 EQLGSFINLVGGGEFAHCLLPPLETL 363
E + NLVG + A CLLPPL+TL
Sbjct: 475 EDRAASANLVG--KCAGCLLPPLDTL 498
>At2g02835.1 68415.m00229 hypothetical protein
Length = 198
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 67 KMAASDSGTDESLYPIAVLIDELKNEDVQL 156
K+ +S + TD+ L IAV+ + + EDVQ+
Sbjct: 28 KIGSSATVTDDGLVGIAVMPERIIREDVQI 57
>At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 765
Score = 25.8 bits (54), Expect = 8.8
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 142 EDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQL 294
E QLR + K TI G + K I L +++ D+D++L L +QL
Sbjct: 221 ERQQLRSANNKLRDTIEELRGSLQPKENKIETLQQSLLDKDQILEDLKKQL 271
>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 788
Score = 25.8 bits (54), Expect = 8.8
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 142 EDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQL 294
E QLR + K TI G + K I L +++ D+D++L L +QL
Sbjct: 221 ERQQLRSANNKLRDTIEELRGSLQPKENKIETLQQSLLDKDQILEDLKKQL 271
>At2g35950.1 68415.m04413 expressed protein
Length = 136
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 213 PLHAQSQRDRRQLLYRVQTKLYILILQLIYENGNRIQ*FIRPGV 82
P QSQ+DR ++L R + +L L++ NGN ++ + GV
Sbjct: 62 PSSLQSQQDRAKVLQRQEARLQ--KRGLVHRNGNVLKESVGTGV 103
>At1g23205.1 68414.m02900 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Phaseolus vulgaris SP|Q43111, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 205
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 127 DELKNEDVQLRLNSIKKLSTIALAL 201
DE + +D+ R++ +KK+++ ALAL
Sbjct: 171 DEPRKDDICARVDDVKKMTSNALAL 195
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,570,101
Number of Sequences: 28952
Number of extensions: 101477
Number of successful extensions: 317
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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