Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301H10f
(336 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 77 5e-16
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 75 3e-15
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 73 9e-15
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 27 1.0
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 4.1
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 25 4.1
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 25 4.1
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 24 7.1
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 23 9.4
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 77.4 bits (182), Expect = 5e-16
Identities = 35/65 (53%), Positives = 50/65 (76%)
Frame = +3
Query: 57 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 236
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 237 NIGSG 251
NIGSG
Sbjct: 61 NIGSG 65
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 74.9 bits (176), Expect = 3e-15
Identities = 34/64 (53%), Positives = 49/64 (76%)
Frame = +3
Query: 57 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 236
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 237 NIGS 248
NIGS
Sbjct: 61 NIGS 64
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 73.3 bits (172), Expect = 9e-15
Identities = 37/92 (40%), Positives = 54/92 (58%)
Frame = +3
Query: 57 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 236
+S +ELA Y+ALIL D+ + +T +K+ ++ KA V+VEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60
Query: 237 NIGSGVXXXXXXXXXXXXXXXXXXXXEEKKEE 332
NIGS EEKKEE
Sbjct: 61 NIGSAGAASAPTAAGAGAAAPAEAAEEEKKEE 92
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 26.6 bits (56), Expect = 1.0
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +3
Query: 39 RSKLKMVSKAELACVYSALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLFAKALE 209
R+ L+ + E S L+L + DV A++ E+IS IL + +W AL
Sbjct: 103 RNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALT 161
Query: 210 GINVRDLIT 236
G+N++D I+
Sbjct: 162 GLNIKDAIS 170
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 24.6 bits (51), Expect = 4.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 21 GLRQLARSKLKMVSKAELACVYSAL 95
G+ QL + ++SKA+L C Y L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 24.6 bits (51), Expect = 4.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 228 GHGH*CLPRLWRTDL 184
G+G CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 24.6 bits (51), Expect = 4.1
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 231 SGHGH*CLPRLWRTDLANMALHLQPPLSRWWKFSHQ 124
SGHG P L + + M L+ PL + W++ +
Sbjct: 357 SGHGFKFFPILGKYSIGCMFRELEEPLLKKWRWKKE 392
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 23.8 bits (49), Expect = 7.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 171 LHLQPPLSRWWKFS 130
LH+Q L +WWK S
Sbjct: 439 LHVQEDLCKWWKES 452
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 23.4 bits (48), Expect = 9.4
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +3
Query: 24 LRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVD 167
+R +A ++++ A + +LV+D V + G+ STI + A++
Sbjct: 1212 VRNMASKCFAAITESNAAGSKALHLLVEDVVPLLGDASSTIHRQGAIE 1259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,152,531
Number of Sequences: 5004
Number of extensions: 21026
Number of successful extensions: 64
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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