Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301H10f
(336 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 81 2e-16
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 29 0.71
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 27 3.8
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332... 27 5.0
01_06_1007 - 33733500-33733604,33733837-33733917,33734191-337342... 27 5.0
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 26 6.6
07_03_0035 - 12677942-12678568 26 6.6
07_01_0738 + 5626062-5626862 26 6.6
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 26 8.7
07_03_1604 - 28089032-28089079,28089161-28089371,28089484-280898... 26 8.7
06_01_0025 - 244068-244177,244279-244333,244500-244527,244621-24... 26 8.7
03_05_0033 - 20048994-20050049,20050131-20050210,20050324-20050435 26 8.7
>08_01_0113 +
897970-898038,898148-898271,898811-898896,898996-899049
Length = 110
Score = 81.4 bits (192), Expect = 2e-16
Identities = 37/65 (56%), Positives = 50/65 (76%)
Frame = +3
Query: 57 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 236
+S +E+AC +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE +V DLI
Sbjct: 1 MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60
Query: 237 NIGSG 251
++GSG
Sbjct: 61 SVGSG 65
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 29.5 bits (63), Expect = 0.71
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 21 GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKIST 143
G+R+LA+ V+K + S +L+ +DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 129 HQLRQHHHPPG*EQSKH 79
HQ R+HHHPP + H
Sbjct: 562 HQRRRHHHPPAWDVEGH 578
>06_01_0469 +
3322886-3323564,3324033-3324953,3325025-3325155,
3325237-3325317,3328173-3328820
Length = 819
Score = 26.6 bits (56), Expect = 5.0
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = +3
Query: 30 QLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 209
Q A LK K +AC L+LV DD T T+ KA A D+ G +AL
Sbjct: 657 QAADHALKRQVKHSVACGVDWLVLVSDDSDFT----DTVRKARAADLRTVVVGDGCRALG 712
Query: 210 GI 215
+
Sbjct: 713 SV 714
>01_06_1007 -
33733500-33733604,33733837-33733917,33734191-33734238,
33734364-33734549,33735148-33735678,33735823-33735864,
33735945-33736065,33736200-33736281,33737169-33737227,
33738492-33738564,33738694-33738913
Length = 515
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 187 VCSPKPWKASMSVT*SPTSALEWVLLRPLV 276
VC +P SP +L WVLLRP++
Sbjct: 482 VCKLRPTALLADGVASPLRSLAWVLLRPIM 511
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -2
Query: 203 GFGEQTWPIW--LYIYSRRFQDGGNFLTSYG 117
G G+ +W +Y +S + QDG NF+ G
Sbjct: 627 GAGKGLMTVWHAMYSHSSKIQDGSNFIDETG 657
>07_03_0035 - 12677942-12678568
Length = 208
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 181 GQVCSPKPWKASMSVT*SPTSALEWVLLRP 270
G V SP + A M SPT+A W LLRP
Sbjct: 96 GVVASPARFGAVMLA--SPTAANRWFLLRP 123
>07_01_0738 + 5626062-5626862
Length = 266
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -3
Query: 250 PEPMLVIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSST 101
P+ L R RT++ K L Q T + A + P ATS+ST
Sbjct: 102 PDSPLASRIRTILTHKKLKKSMPQPTITFSTAVYHHARSTVPAAATSTST 151
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 177 MALHLQPPLSRWWKFSHQLRQHHHPP 100
+ LH +P L W +F +QH P
Sbjct: 4466 LVLHFEPYLMNWSEFDQLQKQHEENP 4491
>07_03_1604 -
28089032-28089079,28089161-28089371,28089484-28089853,
28090034-28090199
Length = 264
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1
Query: 79 VFTLLSSWWMMMLP 120
+F+++SSWWM LP
Sbjct: 30 LFSIISSWWMNPLP 43
>06_01_0025 -
244068-244177,244279-244333,244500-244527,244621-244691,
244829-244926,245069-245186,245573-245636,245744-245808,
245893-245928,246255-246311,246422-246691
Length = 323
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 201 LWRTDLANMALHLQPPLSRWWKFSHQLRQH 112
+W+TD H + L W F H+LRQH
Sbjct: 234 VWQTDCIARVSH-EDGLVVGWIFLHELRQH 262
>03_05_0033 - 20048994-20050049,20050131-20050210,20050324-20050435
Length = 415
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 51 KMVSKAELACVYSALILVDDDVAVTGEKIS---TILKAAAVDVEPYWPGLFAKALEGI 215
+++ +L V + + +VD + T +++ I KA V+ + PGL AKA GI
Sbjct: 155 RVLEGEKLPVVTAKITMVDLPLGATEDRVCGTIDIEKALTDGVKAFEPGLLAKANRGI 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,369,700
Number of Sequences: 37544
Number of extensions: 171742
Number of successful extensions: 453
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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