Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H09f
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    26   1.8  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    25   4.1  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   4.1  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   5.5  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    24   7.2  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    24   7.2  

>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 97  DNFVCT*ICYGDSFNCLVTVITVRMVINVKICN-DTKT*LLCVADYNVKVYY 249
           DN V T   YG ++N L  V   R+ I  K  N D    L    D N K  Y
Sbjct: 103 DNIVSTSYLYGGTYN-LFKVTLPRLGITTKFVNGDDPNDLAAQIDENTKAVY 153


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 9   RGK*AFTDAKT*SNMTFIGFD 71
           +GK AF D K+ + +T +GFD
Sbjct: 42  KGKQAFGDPKSVAGLTILGFD 62


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -2

Query: 232 YNLQHTIIMFWYHYIFSHL 176
           Y++    ++ W+H++FSH+
Sbjct: 152 YDIYTLCLVSWHHHVFSHI 170


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 118 ICYGDSFNCLVTVITVRM-VINVKICNDTKT*LLCVADYNVKVY 246
           + Y DS    + +   ++ V+++ I  D+K  + C AD NVK++
Sbjct: 560 VYYLDSLKFFLNLYGHKLPVLSMDISYDSKLLVTCSADKNVKIW 603


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 46  PT*PL*GSTIFEYPPVFDNFVCT*ICY 126
           PT PL  STI++  PV D F C   C+
Sbjct: 152 PTWPLDASTIYQTYPVADGF-CKWNCW 177


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 161 VMTVTKQLKLSP*QIQVQTKLSNTGGYSKIVEPYKG 54
           V+ +   LK+SP   Q   +  +   + KI+E YKG
Sbjct: 212 VLIIHVLLKVSPAHAQNSQEADDCAMFRKIMEEYKG 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,529,482
Number of Sequences: 5004
Number of extensions: 28975
Number of successful extensions: 54
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)