Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H09f
         (386 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   1.3  
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_43092| Best HMM Match : 7tm_1 (HMM E-Value=0.23)                    28   2.3  
SB_32229| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   7.1  
SB_23732| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_51947| Best HMM Match : 7tm_1 (HMM E-Value=1.4013e-45)              26   9.3  
SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)                  26   9.3  
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)        26   9.3  

>SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 38  DIVQHDLYRVRRFLNIHLCLTTLFVLESVMAIVLTV 145
           D++ HDLY    F+  +L +TT+ VL +V  + + +
Sbjct: 870 DVLPHDLYCTLNFIGKYLGITTMTVLVNVWFVFVII 905


>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 186 FHIYYHSYSNDCY*TVKTIAITDSS 112
           FH++ H+YS+D   T K IAI  SS
Sbjct: 506 FHLHDHTYSSDDKRTAKAIAIVISS 530


>SB_43092| Best HMM Match : 7tm_1 (HMM E-Value=0.23)
          Length = 417

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 186 FHIYYHSYSNDCY*TVKTIAITDSS 112
           FH++ H+YS+D   T K IAI  SS
Sbjct: 319 FHLHDHTYSSDDKRTAKAIAIVISS 343


>SB_32229| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 389

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 139 NCLVTVITVRMVINVKICNDTKT*LLCVADYNVKVYY 249
           NCLV  +  R V N+K   +T    LC+AD  +  +Y
Sbjct: 48  NCLVIYVISR-VHNMKTSTNTLLLNLCIADLLIAAFY 83


>SB_23732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 207 CFGIITYFHIYYHSYSNDCY*TVKT-IAITDSSTNKVVKHRWIFKNRRT 64
           CF  +TYF I   SY +     + T + + +S  N V+ + W  K  RT
Sbjct: 256 CFCALTYFEITRDSYLSPKLVKISTSLVLVNSGINPVI-YCWKMKELRT 303


>SB_51947| Best HMM Match : 7tm_1 (HMM E-Value=1.4013e-45)
          Length = 609

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 250 YNKLSRYNLQHTIIMFWYHYIFSHLLPFV 164
           Y KL++     T+   W H +F  L+PF+
Sbjct: 105 YEKLTKRFTMGTVFFGWLHSLFWTLMPFL 133


>SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1627

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 207 CFGIITYFHIYYHSYSNDCY*TVKTIAITDSSTNK 103
           C G I Y HI++++  +D    ++ + I D  T K
Sbjct: 740 CLGPINYIHIWHNNAGDDPSWFLRQVVIEDVQTMK 774


>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
          Length = 1188

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 145 LVTVITVRMVINVKICNDTKT*LLCVADYNVKVYYNIKL*ICI 273
           L T +++ +V   KIC   +  + C  D   ++YY + L  C+
Sbjct: 290 LATPVSLALVFIPKICASDRVPMKCEYDDGSELYYIVVLAACL 332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,915,285
Number of Sequences: 59808
Number of extensions: 197402
Number of successful extensions: 309
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)