Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H09f
         (386 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidas...    27   4.6  
U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine rec...    27   6.1  

>Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical
           protein T20B3.13 protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = -2

Query: 232 YNLQHTIIMFWYHYIFSHLLPFVQXXXXLNS*NYRHNRFKYKQSCQTQVD 83
           YN+ H  I  W   +    LPFV       S N  +N   YK  C  QVD
Sbjct: 242 YNITHNSIGQWESLVCYKQLPFVCELPTTTSDNCTNN---YKNHCYIQVD 288


>U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical
           protein C14C11.3 protein.
          Length = 596

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 238 SRYNLQHTIIMFWYHYIFSHLLPFVQ 161
           +RYN ++ I   WYH     +LPFVQ
Sbjct: 508 NRYNRKYNISQNWYH---REMLPFVQ 530


>AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 596

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 238 SRYNLQHTIIMFWYHYIFSHLLPFVQ 161
           +RYN ++ I   WYH     +LPFVQ
Sbjct: 508 NRYNRKYNISQNWYH---REMLPFVQ 530


>U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein274 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 206 VLVSLHIFTFITIRTVMTVTKQLKLSP*QIQVQ 108
           +L+   IFTF+  + +   +K+L LSP  I++Q
Sbjct: 202 LLLESGIFTFLIYKNMSAQSKELSLSPQTIKMQ 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,257,136
Number of Sequences: 27780
Number of extensions: 157911
Number of successful extensions: 324
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)