Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H09f
         (386 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51120.1 68414.m05747 AP2 domain-containing transcription fac...    27   4.4  
At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identi...    27   5.8  

>At1g51120.1 68414.m05747 AP2 domain-containing transcription
           factor, putative similar to DNA-binding protein RAV1
           GI:3868857 from [Arabidopsis thaliana]
          Length = 352

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -1

Query: 164 TVMTVTKQLKLSP*QIQVQTK--LSNTGGYSKIVEPYKGHVG 45
           +V+++TK++K  P ++   TK  LSNT  +  +V+   GH G
Sbjct: 20  SVLSLTKRMK--PTEVTTTTKPALSNTTKFKGVVQQQNGHWG 59


>At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identical
           to PRLI-interacting factor K [Arabidopsis thaliana]
           GI:11139266; contains Pfam profiles PF03152: Ubiquitin
           fusion degradation protein UFD1, PF00096: Zinc finger,
           C2H2 type
          Length = 561

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 185 KYVMIPKHDYCVLQIIT*KFIIILNYKYVYRTILGK*MYLNID 313
           +Y+ +PK  Y  LQ     F  + N+K +  TIL +   L++D
Sbjct: 170 RYIRLPKGSYAKLQPDNLGFSDLPNHKAILETILRQHATLSLD 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,486,935
Number of Sequences: 28952
Number of extensions: 132286
Number of successful extensions: 205
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)