Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301H08f
(344 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC) 133 3e-32
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si... 126 4e-30
At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identic... 28 1.5
At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identic... 28 1.5
At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identic... 28 1.5
At4g28730.1 68417.m04109 glutaredoxin family protein contains gl... 27 2.5
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 27 4.4
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 27 4.4
At2g15620.1 68415.m01789 ferredoxin--nitrite reductase, putative... 26 7.7
>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
Length = 92
Score = 133 bits (321), Expect = 3e-32
Identities = 58/88 (65%), Positives = 69/88 (78%)
Frame = +2
Query: 11 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 190
MAKRTKKVGI GKYGTRYGAS+RK +KKMEV+QH+KY C FCGK +KR VGIW CK C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60
Query: 191 KRTVAGGAWVFSTTAASSCRSAVRRLRE 274
+ AGGA+ +T +A + RS +RRLRE
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLRE 88
>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
similar to putative 60S ribosomal protein L37a
GB:AAD28753 [Gossypium hirsutum]
Length = 92
Score = 126 bits (304), Expect = 4e-30
Identities = 56/88 (63%), Positives = 66/88 (75%)
Frame = +2
Query: 11 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 190
M KRTKK I GKYGTRYGASLRK +KKMEV+QH KY C FCGK ++KR VGIW CK C
Sbjct: 1 MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60
Query: 191 KRTVAGGAWVFSTTAASSCRSAVRRLRE 274
+ AGGA+ +T +A + RS +RRLRE
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLRE 88
>At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 545
Score = 28.3 bits (60), Expect = 1.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 4 YQNGQTYQKGWNYW 45
Y +G+TYQ W+YW
Sbjct: 264 YSSGETYQPRWDYW 277
>At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 428
Score = 28.3 bits (60), Expect = 1.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 4 YQNGQTYQKGWNYW 45
Y +G+TYQ W+YW
Sbjct: 183 YSSGETYQPRWDYW 196
>At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 516
Score = 28.3 bits (60), Expect = 1.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 4 YQNGQTYQKGWNYW 45
Y +G+TYQ W+YW
Sbjct: 264 YSSGETYQPRWDYW 277
>At4g28730.1 68417.m04109 glutaredoxin family protein contains
glutaredoxin domain, Pfam:PF00462
Length = 174
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 41 TGKYGTRYGASLRKMVKKMEVTQHAKYTCSFC 136
+ +G+R S+RK V + V ++K CS+C
Sbjct: 62 SSSFGSRMEESIRKTVTENTVVIYSKTWCSYC 93
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 216 QAPPATVLLHRLQDQMPTQERF 151
+ PP TVL+ +LQ+ + + ERF
Sbjct: 802 KVPPMTVLIQKLQNALSSLERF 823
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 216 QAPPATVLLHRLQDQMPTQERF 151
+ PP TVL+ +LQ+ + + ERF
Sbjct: 875 KVPPMTVLIQKLQNALSSLERF 896
>At2g15620.1 68415.m01789 ferredoxin--nitrite reductase, putative
strong similarity to ferredoxin--nitrite reductase
[Nicotiana tabacum] GI:19893; contains Pfam profiles
PF03460: Nitrite/Sulfite reductase ferredoxin-like half
domain, PF01077: Nitrite and sulphite reductase 4Fe-4S
domain
Length = 586
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 167 GIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRLREV 277
G +S KRC+ + AWV + C++ + R++
Sbjct: 286 GFFSPKRCEEAIPLDAWVPADDVLPLCKAVLEAYRDL 322
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,494,946
Number of Sequences: 28952
Number of extensions: 140296
Number of successful extensions: 419
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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