Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301H07f
(445 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 30 0.14
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 29 0.42
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 27 1.7
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 27 1.7
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 27 1.7
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 3.0
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 4.0
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 4.0
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz... 25 5.2
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 25 5.2
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 5.2
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 25 5.2
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 25 6.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 24 9.1
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 24 9.1
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 30.3 bits (65), Expect = 0.14
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +2
Query: 227 PPAADPSRALRKARNSAIGTTSERTESRRYKDSSPTSGYTKRNSLTNGVRDSNGNELPS 403
PP A PS K+ SA+ R +S + S TS KR+S T+ + ++G LPS
Sbjct: 400 PPLATPSSRNSKSTQSAVPENVSRFDS---NEPSATSPILKRSSPTDSISQNSG--LPS 453
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 28.7 bits (61), Expect = 0.42
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 22 RQNSKRRPV*NEKKFQLVGFHEHGRALQVVFAVELHTVDAENTAATKASESEL 180
R S RRP + K+ L FHE G+ A L ++D+ ++ S L
Sbjct: 187 RVRSARRPANSSKESLLASFHETGKVHIWDIAPHLRSLDSPGVMVSRKENSPL 239
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 41 APSRTKRNFSSSAFMSTAELYKLYSP 118
+PS +K FSSS+F ST L SP
Sbjct: 705 SPSSSKFRFSSSSFQSTIRRNSLTSP 730
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 26.6 bits (56), Expect = 1.7
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 182 GEISRSKSISNDIGRPPAADPSRALRKARNSAIGTTSERTESRRYKD 322
G+I+ + +S + +P AADP L + NS I + E Y D
Sbjct: 186 GDITAKRLLSGQVAQPAAADP---LYRVLNSKIFNLNRGDEGDIYND 229
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 26.6 bits (56), Expect = 1.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 359 GSFVSCSPTSENYPCNVGF 303
GSF +C T E+Y CN F
Sbjct: 616 GSFDACECTDEDYECNTQF 634
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.8 bits (54), Expect = 3.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 309 DVTRIVLRRRATRNETPLRT 368
DV R++L R ++ +TPLRT
Sbjct: 77 DVPRLILTRSNSQEQTPLRT 96
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 4.0
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 269 NSAIGTTSERTESRRYKDSSPTSGYTKRNSLTNGVRDSNGNELPSVPEMRKK 424
NS+ T ES Y++S+P S TK + N + + L V +KK
Sbjct: 674 NSSFETIENLIESFDYENSTPLSQLTKYTEIINDLITCLNSFLYHVSATKKK 725
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 4.0
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Frame = +2
Query: 182 GEISRSKSISNDI---------GRPPAADPSRALRKARNSAIGTTSERTESRRYKDSSPT 334
G SR+ SI++DI G PPAA S +++ NS T + +R ++S+
Sbjct: 629 GYHSRNTSIASDIDGVPKKSTLGAPPAAHTSAQMQRMSNSFASQTKQVFGEQRTENSARE 688
Query: 335 SGYTKRNSLT 364
S R++++
Sbjct: 689 SLRHSRSNMS 698
>SPCC1919.03c |||AMP-activated protein kinase beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 298
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 323 SSPTSGYTKRNSLTNGVRDSNGNELPSVP 409
+S +SG+TKR S T+G + P VP
Sbjct: 72 TSGSSGHTKRRSQTSGKKTHQPYSGPCVP 100
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 5.2
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Frame = +2
Query: 68 SSSAFMSTAELYKLYSPSNYIPL-TXXXXXXXXXXXXNYGEISRSKSISNDIG-RPPAAD 241
S S++ + KL + SNY PL + G S + S+S+ P +D
Sbjct: 335 SVSSYQQQHRIPKL-NASNYSPLLSPSSHRKTSGNLSRTGSESSAVSLSDTTNLNTPISD 393
Query: 242 PSRALRKARNSAIGTTSERTESRRYKDSSPTSGYTKRNSLTNGVRDSNGN 391
S + + + +SR S P++ + +S TNG + N N
Sbjct: 394 IPSPGSSTTCSNLSSPHIKRKSRSPPQSLPSTPFPTSSSSTNGTLEPNAN 443
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 5.2
Identities = 31/132 (23%), Positives = 54/132 (40%)
Frame = +2
Query: 2 STTRSESGKTLSDAPSRTKRNFSSSAFMSTAELYKLYSPSNYIPLTXXXXXXXXXXXXNY 181
S++ S S + S + S + + SSS+ S++ S S+ +P+T ++
Sbjct: 166 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPIT-------SSTSSSH 218
Query: 182 GEISRSKSISNDIGRPPAADPSRALRKARNSAIGTTSERTESRRYKDSSPTSGYTKRNSL 361
S S S S+ R P++ S + ++ I T + S SS T +L
Sbjct: 219 SSSSSSSSSSSSSSR-PSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALAL 277
Query: 362 TNGVRDSNGNEL 397
N + SN L
Sbjct: 278 -NASKASNHTSL 288
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +1
Query: 160 KASESELRGDIEIKVDLE 213
K S+++LRGD+ ++VD+E
Sbjct: 325 KDSKTDLRGDLYLEVDIE 342
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 24.6 bits (51), Expect = 6.9
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +2
Query: 230 PAADPSRALRKARNSAIGTTSERTESRRYKDSSPTSGYTKRNSLTNGVRDSNGNEL 397
P DP+R+ R + + + + S ++ SPTS T S+ V S+ + L
Sbjct: 148 PTIDPTRSTRSSSHIQSLSPESKQTSDGHRPPSPTSITTTSTSIDPSVAFSSKSTL 203
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.2 bits (50), Expect = 9.1
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +2
Query: 188 ISRSKSISNDIGRPPAADPSRALRKARNSAIGTTSERTESRRYKDSSPTSGYTKRNS 358
IS S S+ + A P +L NSA+ + + + YK + + Y +NS
Sbjct: 804 ISMGSSASSYVPLEIAPRPMSSLEHTMNSAMSPGNLQRTANLYKPMTTPNAYNIKNS 860
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 24.2 bits (50), Expect = 9.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 65 FSSSAFMSTAELYKLYSPSNYIPLT 139
++ SA ++ E Y ++P N +PLT
Sbjct: 181 YADSANLTNREPYPAWTPENELPLT 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,604,285
Number of Sequences: 5004
Number of extensions: 27637
Number of successful extensions: 114
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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