Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301H07f
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 33 0.10
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 31 0.42
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 28 2.9
03_01_0113 + 905535-905840,906601-906812,906929-907196,907314-90... 28 2.9
08_02_1437 - 27096364-27097252,27098931-27099022,27099382-270996... 28 3.9
03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880... 27 5.1
09_04_0107 - 14640097-14640348,14640472-14640701,14640805-146412... 27 6.8
03_04_0243 + 19298293-19299117 27 6.8
02_04_0657 + 24786717-24786924,24786925-24786965,24787379-247875... 27 6.8
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 27 6.8
09_04_0235 + 15904891-15905218,15906732-15907594 27 9.0
09_02_0340 + 7456343-7456552,7456910-7456931,7457274-7457335,745... 27 9.0
07_03_1292 - 25558643-25559376,25559989-25560097,25560578-255606... 27 9.0
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 33.1 bits (72), Expect = 0.10
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +2
Query: 191 SRSKSISNDIGRPPAADPSRALRKARNSAIGTTSERTESRRYKDSS 328
S SKS+ + R P A SR+ KAR +I +S R+ RR + S
Sbjct: 496 SMSKSLPRSVSRSPVARRSRSPVKARTRSISRSSARSLQRRSRSRS 541
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 31.1 bits (67), Expect = 0.42
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 191 SRSKSISNDIGRPPAADPSRALRKARNSAIGTTSERTESRRYKD 322
SRS ++ PP A P R R++ + + G+ +R+ S RY D
Sbjct: 847 SRSSQPADRSAPPPPASPDRHSRRSPHRSSGSGKKRSSSDRYDD 890
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 257 RKARNSAIGTTSERTESRRYKDSSPTSGYTKRNSLTNGVRDSNGNELPSVPE 412
R AR S G T + R Y D+ T+G+ +S NG NG P+
Sbjct: 477 RPARMSDPGHTISNGDHRHYADNGSTNGHFSGDS--NGALSRNGGSSTDSPD 526
>03_01_0113 +
905535-905840,906601-906812,906929-907196,907314-907595
Length = 355
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 221 GRPPAADPSRALRKARNSAIGTTSERTESRRYK 319
G PP A P LR R+ A + R E RYK
Sbjct: 51 GGPPVAAPRVRLRDGRHLAYAESGVRKEDARYK 83
>08_02_1437 -
27096364-27097252,27098931-27099022,27099382-27099654,
27099872-27100819
Length = 733
Score = 27.9 bits (59), Expect = 3.9
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +2
Query: 224 RPPAADPSRALRKARNSAIGTTSERTESRRYKDSSP---TSGYTKRNSLTNGVR-DSNGN 391
+P D S+ R S+ S+ +E K SSP TSG + ++TN V+ SN
Sbjct: 327 KPLHKDDSKIQTPPRKSSASAPSDDSEKIVNKPSSPLRRTSGVSSNTNITNLVKIASNSK 386
Query: 392 ELPSVPEMRKKFDPKMA 442
+L P +A
Sbjct: 387 KLTDASASWTSLPPSLA 403
>03_05_0064 -
20385290-20385346,20385452-20387133,20387266-20388083,
20388184-20388303,20389036-20389305,20390094-20390269
Length = 1040
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 254 LRKARNSAIGTTSERTESRRYKDSSPTSGYTKRNSLTNG 370
++K + TS+ + S R ++ P+SG+ NS T+G
Sbjct: 519 VKKTNTNRTVQTSKVSVSERLRNGRPSSGFDDENSSTSG 557
>09_04_0107 -
14640097-14640348,14640472-14640701,14640805-14641215,
14641481-14643831,14643927-14644093
Length = 1136
Score = 27.1 bits (57), Expect = 6.8
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Frame = +2
Query: 191 SRSKSISNDIGRPPAA-DPSRALRKARNSAI-GTTSERTESRRY-----KDSSPTSGYTK 349
S +S+++ +GR PAA PS A R + +A+ G TS +E + +S+ + GY+
Sbjct: 296 SARQSVASQLGRKPAASSPSAASRGSAAAAVSGRTSFASEFSGFGGDSDSESTASDGYSV 355
Query: 350 RNSLTNGVRD 379
++ + + D
Sbjct: 356 KDLVVDSDSD 365
>03_04_0243 + 19298293-19299117
Length = 274
Score = 27.1 bits (57), Expect = 6.8
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 221 GRPPAADP-SRALRKARNSAIGTTSERTESRRYKDSSPTSGYTKRNSLT-NGVRDSNGNE 394
G P D SRA A +A+ TS S SSPTS R+SLT + V S
Sbjct: 169 GHPVVTDSLSRAPGAAWAAAMAPTSWSRTSAPPASSSPTSPRRARSSLTCSRVAPSTPRS 228
Query: 395 LPSVPEMRKKFDP 433
+P +++ P
Sbjct: 229 ATLLPRQPRRWRP 241
>02_04_0657 +
24786717-24786924,24786925-24786965,24787379-24787521,
24787597-24787774,24788054-24788123,24788197-24788345,
24788491-24788586,24789213-24789283,24789879-24789940,
24790175-24790238,24790326-24790410,24790515-24790641,
24790714-24790775,24790863-24790923,24790987-24791147,
24791355-24791648
Length = 623
Score = 27.1 bits (57), Expect = 6.8
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +2
Query: 176 NYGEISRSKSISNDIGRPPAADPSRALRKARNSAIGTTSERTESRRYKDSSPTSGYTKRN 355
+YGE ++ ++I + + P A R +S G+TS + S P+SG
Sbjct: 507 HYGEHTKHRNILDSLLAPKTAVDLDKRRPTSSSRNGSTSRKA---LLSSSRPSSGDPIDP 563
Query: 356 SLTNGVRDSNGNELPS 403
+ +N + S+G+ PS
Sbjct: 564 NRSNLIPTSSGSSRPS 579
>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 27.1 bits (57), Expect = 6.8
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 174 RITGRYRDQSRSRTTSV-DHQQPTHHAL*GKPGTRLSEPHLKEPKADVTRIVLRRRA 341
R T R + + S S D Q+ + + GK G +++P+ +EPK TR RR+A
Sbjct: 900 RPTTRSKSSAASSGASKKDSQEESTNTAKGK-GKAVAKPNSEEPKGPNTRNATRRKA 955
>09_04_0235 + 15904891-15905218,15906732-15907594
Length = 396
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 332 TSGYTKRNSLTNGVRDSNGNELPSVPEMRKKFDPKM 439
T G KR G+ GN +P++ + FDP+M
Sbjct: 314 TGGAPKRMRNNYGIAVPQGNGMPNLAQNMPTFDPEM 349
>09_02_0340 +
7456343-7456552,7456910-7456931,7457274-7457335,
7457594-7457647
Length = 115
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 284 TTSERTESRRYKDSSPTSGYTKRNSLTNGVRDSNGNELPS 403
TT +R Y +SP G+T+R S T G + P+
Sbjct: 11 TTPGSASTRWYSPNSPPLGFTRRISSTPGSSSTKAKVTPA 50
>07_03_1292 -
25558643-25559376,25559989-25560097,25560578-25560676,
25560797-25560893,25560973-25561027,25561072-25561187,
25561445-25561562,25562369-25562684
Length = 547
Score = 26.6 bits (56), Expect = 9.0
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +2
Query: 185 EISRSKSISNDIGRPPAADPSRALRKARNSAIGTTSERTESRRYKDSS--PTSGYTKRNS 358
E RSK++ R AA RAL +R A G + + T+ +++ + P SG + +
Sbjct: 272 EADRSKALDEKHSRGDAARRVRAL--SRPDAAGNSKKTTQKGKHQSQAGRPDSGSSIKKG 329
Query: 359 LTNGVRDSNGNELPSVPEMRKK 424
++ SN P +P R +
Sbjct: 330 KKRVMQSSN----PDLPTKRSR 347
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,689,937
Number of Sequences: 37544
Number of extensions: 184160
Number of successful extensions: 599
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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