Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H07f
         (445 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40316| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.32 
SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)                 30   0.99 
SB_40648| Best HMM Match : DUF646 (HMM E-Value=6.9)                    29   2.3  
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)                  29   2.3  
SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_22216| Best HMM Match : PGAMP (HMM E-Value=4)                       28   4.0  
SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12)                 28   4.0  
SB_30060| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_43292| Best HMM Match : FYRN (HMM E-Value=6.3e-15)                  27   7.0  
SB_35214| Best HMM Match : FYRN (HMM E-Value=6.3e-15)                  27   7.0  
SB_48580| Best HMM Match : FYRN (HMM E-Value=6.3e-15)                  27   7.0  
SB_17862| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_12592| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_5164| Best HMM Match : FYRN (HMM E-Value=6.3e-15)                   27   7.0  
SB_51543| Best HMM Match : DUF881 (HMM E-Value=1.2)                    27   9.2  
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        27   9.2  

>SB_40316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 287 TSERTESRRYKDSSPTSGYTKRNSLTNGVRDSNGNELP 400
           T E  E+  +  S PTSGY     +T GV+    +E P
Sbjct: 22  TDEHCETPTHPPSPPTSGYAMAQRMTVGVKGEESDETP 59


>SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)
          Length = 1020

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 168 RIRITGRYRDQSRSRTTSVDHQQPTHHAL*GKPGTRLSEPHLKEPK 305
           R+R   +Y+  S     SV+H QP  H L G   TR    H + P+
Sbjct: 101 RLRELKKYQKSSIGEDVSVEHMQPNAHRL-GPADTRPGVAHPRPPQ 145


>SB_40648| Best HMM Match : DUF646 (HMM E-Value=6.9)
          Length = 218

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 215 DIGRPPAADPSRALRKARNSAIGTTSERT 301
           D+GRPP A P+ A R+A +S  G  S+ T
Sbjct: 127 DLGRPPGAVPASA-RQAAHSTSGEKSDHT 154


>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
          Length = 662

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +2

Query: 224 RPPAADPSRALRKARNSAIGTTSERTESRRYKDSSPTSGYTKRNSLTNGVRDSNGNEL 397
           RPP A P  A      S  G+   R  +R    S+P S      +L +GV+D++ NE+
Sbjct: 323 RPPRAGPGTAGPAPDRSTFGSKEGRMAAR----SAPDSHQVFIGNLPSGVKDADVNEV 376


>SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1460

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/70 (24%), Positives = 29/70 (41%)
 Frame = +2

Query: 230 PAADPSRALRKARNSAIGTTSERTESRRYKDSSPTSGYTKRNSLTNGVRDSNGNELPSVP 409
           P   P++   K      G  SE    +RY+ S P      + + T  + D   N+LP  P
Sbjct: 281 PPTQPTKI--KENTQEAGKWSEAKIKQRYQPSIPFDSTASKQNFTVHIDDEAINKLPCTP 338

Query: 410 EMRKKFDPKM 439
           +  +  + K+
Sbjct: 339 QHGQMVNDKV 348


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 221  GRP-PAADPSRALRKARNSAIGTTSERTESRRYKDSSPTSGYTK-RNSLTNGVRDSNGNE 394
            GRP P  +P+   R  R+      SER   R  +  +P SGY + RN + +G  D   ++
Sbjct: 1531 GRPRPRLEPADRGRSQRSDRRSLESERKPLRDSERRAPDSGYEQSRNDVPSGNFDKRESQ 1590


>SB_22216| Best HMM Match : PGAMP (HMM E-Value=4)
          Length = 132

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 230 PAADPSRALRKARNSAIGTTSERTESRRYKD 322
           P A P   +R++  S+ GTT  R+  +RY +
Sbjct: 84  PCAMPDPKMRRSNRSSSGTTHNRSRLKRYAE 114


>SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12)
          Length = 642

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 26  KTLSDAPSRTKRNFSSSAFMSTAELYKLYSPSNYIPL 136
           +  S+ P + + N  +SAF+   E+Y+L  P    PL
Sbjct: 130 ENFSELPMQDQANRINSAFLEPLEVYRLNEPLERFPL 166


>SB_30060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +1

Query: 34  KRRPV*NEKKFQLVGFHEHGRALQVVFAVELHTVDAENTAATKASESELRGD 189
           +R+P+  E++F+ +  H H R     + +  +  D+E+    +  E+E  GD
Sbjct: 80  ERKPLRYEQEFRKLMHHNHARRKPASYFMNTNHEDSEDDEEDEKMEAEEGGD 131


>SB_43292| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
          Length = 645

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/78 (23%), Positives = 32/78 (41%)
 Frame = +2

Query: 176 NYGEISRSKSISNDIGRPPAADPSRALRKARNSAIGTTSERTESRRYKDSSPTSGYTKRN 355
           N  E ++   I +DI  PP+ + +   +   +SA    +ERT    Y  +S       ++
Sbjct: 255 NTEEDTQHHVIEHDIKEPPSTNANDKCKLKSDSAKEKNNERTTHNNYLMNSTDKADPNKS 314

Query: 356 SLTNGVRDSNGNELPSVP 409
           +    +       LPS P
Sbjct: 315 TEITRILSGYKQILPSTP 332


>SB_35214| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
          Length = 762

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/78 (23%), Positives = 32/78 (41%)
 Frame = +2

Query: 176 NYGEISRSKSISNDIGRPPAADPSRALRKARNSAIGTTSERTESRRYKDSSPTSGYTKRN 355
           N  E ++   I +DI  PP+ + +   +   +SA    +ERT    Y  +S       ++
Sbjct: 107 NTEEDTQHHVIEHDIKEPPSTNANDKCKLKSDSAKEKNNERTTHNNYLMNSTDKADPNKS 166

Query: 356 SLTNGVRDSNGNELPSVP 409
           +    +       LPS P
Sbjct: 167 TEITRILSGYKQILPSTP 184


>SB_48580| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
          Length = 847

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/78 (23%), Positives = 32/78 (41%)
 Frame = +2

Query: 176 NYGEISRSKSISNDIGRPPAADPSRALRKARNSAIGTTSERTESRRYKDSSPTSGYTKRN 355
           N  E ++   I +DI  PP+ + +   +   +SA    +ERT    Y  +S       ++
Sbjct: 255 NTEEDTQHHVIEHDIKEPPSTNANDKCKLKSDSAKEKNNERTTHNNYLMNSTDKADPNKS 314

Query: 356 SLTNGVRDSNGNELPSVP 409
           +    +       LPS P
Sbjct: 315 TEITRILSGYKQILPSTP 332


>SB_17862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 301 GSFRCGSDSRVPGFP*SA*WVGCWWSTDVVRD 206
           GSFRCG++ R P     A +V C  S   +RD
Sbjct: 300 GSFRCGNEIRFPVSKGIAGYVACTGSILNIRD 331


>SB_12592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +1

Query: 58  KKFQLV-GFHEHGRALQVVFAVELHTVDAENTAATKASESELRGDIEI-KVD-LER 216
           K+ Q V G  E  + LQ V A +  T+D  NT+ ++  E+  R +  + ++D LER
Sbjct: 69  KRLQAVDGVTERVQELQGVVATDRETIDDPNTSESRRQEARERNEERLSEIDELER 124


>SB_5164| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
          Length = 435

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/78 (23%), Positives = 32/78 (41%)
 Frame = +2

Query: 176 NYGEISRSKSISNDIGRPPAADPSRALRKARNSAIGTTSERTESRRYKDSSPTSGYTKRN 355
           N  E ++   I +DI  PP+ + +   +   +SA    +ERT    Y  +S       ++
Sbjct: 255 NTEEDTQHHVIEHDIKEPPSTNANDKCKLKSDSAKEKNNERTTHNNYLMNSTDKADPNKS 314

Query: 356 SLTNGVRDSNGNELPSVP 409
           +    +       LPS P
Sbjct: 315 TEITRILSGYKQILPSTP 332


>SB_51543| Best HMM Match : DUF881 (HMM E-Value=1.2)
          Length = 178

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 85  EHGRALQVVFAVELHTVDAENTAATKASESELRGDIEI-KVD-LER 216
           E  R LQ V A +  T+D  NT+ ++  E+  R D  + ++D LER
Sbjct: 16  ERVRELQGVVATDRETIDDPNTSESRRQEARERKDERLSEIDELER 61


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 191 SRSKSISNDIGRPPAADPSRALRKARNSAIGTTSERTESRRYKDSSPTSGYTK 349
           SR +     +  P   DPS    + R S   T+ +RT   R + SSP S   K
Sbjct: 370 SREEETQKRVDAP--RDPSPMEEERRQSQRATSKQRTNPDRRRKSSPPSASEK 420


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,197,992
Number of Sequences: 59808
Number of extensions: 208738
Number of successful extensions: 868
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)