Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H07f
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   1.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   2.6  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   4.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.1  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   6.1  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 308 RRYKDSSPTSGYTKRNSLTNGVRDSNGNELPSVPEMRKKFDPKM 439
           +R KDS+  +   K  S   G  ++  NE P +  +++ ++P M
Sbjct: 143 KRVKDSTNCNCGWKNPSRIVGGTNTGINEFPMMAGIKRTYEPGM 186


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 269 SWLSLERVMGRLLVVYRCRSRSTL 198
           S L+  +V+G L ++Y C+  +T+
Sbjct: 157 STLAPGKVLGELAILYNCKRTATI 180


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 85  EHGRALQVVFAVELHTVDAENTAAT---KASESELRGDIEIKVDLE 213
           +H   ++V+F   +H+ D +  A     + +   L  D+EIKV +E
Sbjct: 163 KHFNYMKVIF---IHSSDTDGRALLGRFQTTSQNLEDDVEIKVQVE 205


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 330 RRRATRNETPLRTE*GTVMAMS 395
           R+R     T ++ E G++MAMS
Sbjct: 884 RKRPASQATSVKAEPGSIMAMS 905


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 11  RSESGKTLSDAPSRTKRNFSSSAFMSTAELYKLYSPSNYI 130
           RS   K +S   ++T  N ++  +       KLY   NYI
Sbjct: 75  RSREPKIISSLSNKTIHNNNNYKYNYNNNCKKLYYNINYI 114


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 377 DSNGNELPSVPE 412
           D +GNEL SVP+
Sbjct: 437 DLSGNELTSVPD 448


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
          protein.
          Length = 208

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 13 ERERQNSKRRPV*NEKKFQL 72
          +R     KR+P+  ++KF+L
Sbjct: 10 KRRATGGKRKPIRKKRKFEL 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,724
Number of Sequences: 438
Number of extensions: 2024
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)