Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H06f
         (334 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   4.5  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   4.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   4.5  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 298 QGDKCTDMFLCRFSNL 251
           +GD C D+  C  S L
Sbjct: 55  EGDNCRDVIQCTSSGL 70


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 241 PNTIGSRNGTGTCPYICRLASG 306
           PN I   NGTG      RLA+G
Sbjct: 161 PNNIILGNGTGVQLVPTRLANG 182


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 299 ARRQMYGHVPVPFLEP 252
           A R    H PVP+L P
Sbjct: 156 ASRHHVDHQPVPYLTP 171


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,042
Number of Sequences: 336
Number of extensions: 1369
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6473381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)