Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H06f
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   143   7e-36
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   143   7e-36
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    26   1.7  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   3.0  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    24   5.3  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  143 bits (346), Expect = 7e-36
 Identities = 65/101 (64%), Positives = 78/101 (77%)
 Frame = +3

Query: 3   QATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVV 182
           Q  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSIRGRILTG V
Sbjct: 16  QPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTV 72

Query: 183 QKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 305
              KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR
Sbjct: 73  VSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  143 bits (346), Expect = 7e-36
 Identities = 65/101 (64%), Positives = 78/101 (77%)
 Frame = +3

Query: 3   QATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVV 182
           Q  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSIRGRILTG V
Sbjct: 16  QPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTV 72

Query: 183 QKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 305
              KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR
Sbjct: 73  VSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 322 QQSPTSLKQGDKCTDMFLCRFSNLLY 245
           +QSPT +     CTDM   RF N++Y
Sbjct: 163 KQSPTLMASASACTDMLNRRF-NVVY 187


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 111 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 13
           YP    W+     +++    CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 24  RKGGMKRKDMRHHKNVGLGFKTPREAIEG 110
           R G     D++  +N+G+ F+TP +   G
Sbjct: 194 RPGDHNSTDLKFAENIGIKFETPEQFFLG 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,345,975
Number of Sequences: 5004
Number of extensions: 22888
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)