Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301H06f
(334 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 140 2e-34
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 131 2e-31
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 128 8e-31
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 128 8e-31
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 116 4e-27
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 111 2e-25
08_02_0383 - 16539472-16539633,16543044-16543205 33 0.056
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 29 1.2
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 27 2.8
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 26 6.4
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352... 26 6.4
11_06_0289 - 21969248-21973516 26 8.5
11_06_0185 + 21018045-21022307 26 8.5
10_02_0105 - 5345149-5347833 26 8.5
02_05_0258 + 27222058-27223198,27223297-27223460,27224399-272245... 26 8.5
02_02_0485 + 10853712-10854686 26 8.5
01_06_0711 + 31388369-31388799,31388907-31389079,31389852-313899... 26 8.5
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 140 bits (339), Expect = 2e-34
Identities = 59/84 (70%), Positives = 69/84 (82%)
Frame = +3
Query: 54 RHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLH 233
R KN+GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G KM RTI++RR+YLH
Sbjct: 25 RFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLH 84
Query: 234 YLPKYNRFEKRHRNMSVHLSPCFR 305
++ KY R+EKRH N+ H+SPCFR
Sbjct: 85 FVKKYQRYEKRHSNIPAHISPCFR 108
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 131 bits (316), Expect = 2e-31
Identities = 59/91 (64%), Positives = 69/91 (75%), Gaps = 7/91 (7%)
Frame = +3
Query: 54 RHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLH 233
R KN+GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G KM RTI++RR+YLH
Sbjct: 34 RFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLH 93
Query: 234 YLPKYNR-------FEKRHRNMSVHLSPCFR 305
++ KY R +EKRH N+ H+SPCFR
Sbjct: 94 FVKKYQRQVNLVAGYEKRHSNIPAHISPCFR 124
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 128 bits (310), Expect = 8e-31
Identities = 65/115 (56%), Positives = 79/115 (68%), Gaps = 14/115 (12%)
Frame = +3
Query: 3 QATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 167
Q VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI
Sbjct: 12 QPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI 71
Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVHLSPCFR 305
+ G KM RTI++RR+YLH++ KY R+EKRH N+ H+SPCFR
Sbjct: 72 IAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR 126
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 128 bits (310), Expect = 8e-31
Identities = 65/115 (56%), Positives = 79/115 (68%), Gaps = 14/115 (12%)
Frame = +3
Query: 3 QATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 167
Q VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI
Sbjct: 12 QPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI 71
Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVHLSPCFR 305
+ G KM RTI++RR+YLH++ KY R+EKRH N+ H+SPCFR
Sbjct: 72 IAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR 126
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 116 bits (280), Expect = 4e-27
Identities = 65/130 (50%), Positives = 79/130 (60%), Gaps = 29/130 (22%)
Frame = +3
Query: 3 QATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 167
Q VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI
Sbjct: 12 QPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI 71
Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYN------------------------RFEKRHRN 275
+ G KM RTI++RR+YLH++ KY R+EKRH N
Sbjct: 72 IAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNNYGFYLCFFSFFFPISDLGCRYEKRHSN 131
Query: 276 MSVHLSPCFR 305
+ H+SPCFR
Sbjct: 132 IPAHVSPCFR 141
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 111 bits (266), Expect = 2e-25
Identities = 54/89 (60%), Positives = 65/89 (73%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 QATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 167
Q VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI
Sbjct: 12 QPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI 71
Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYNR 254
+ G KM RTI++RR+YLH++ KY R
Sbjct: 72 IAGTCHSAKMNRTIIVRRNYLHFVKKYQR 100
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 33.1 bits (72), Expect = 0.056
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVGD 317
+ G+V KMQ+++V+ D L + YNR+ KR H ++GD
Sbjct: 4 VVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVKRTSKFMAHDETEDCNIGD 53
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 102 IEGTYIDKKCPFTGNVSIRGRILTGVVQKM-KMQRTIVIRRDYLHYLPKY 248
+ GT PFTG++S G + + KM + +V +DYLH K+
Sbjct: 461 VRGTEDAPITPFTGDMSQSGDAIVAALMKMLAINPHLVTDKDYLHTAMKH 510
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 21 NRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGR 164
N G ++RH ++G E T +DK+ P +G S+ GR
Sbjct: 117 NLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGR 164
>04_04_1571 +
34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 5 GHRFPEQERWHEEEGHASP*ECWFRLQNSQRGD*GY 112
G + Q W E G +SP WF+L GD Y
Sbjct: 660 GWKCRNQVPWDPESGGSSPTAAWFKLFWQYIGDCSY 695
>03_01_0458 -
3521938-3522024,3522133-3522213,3522673-3522806,
3523189-3523270,3523420-3523692,3523953-3524162,
3524252-3524337,3525197-3525289,3526003-3526227,
3526320-3526930,3529328-3529395,3529491-3529679,
3529773-3529901,3530013-3532484
Length = 1579
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 66 SYGDACPSSSCHLSCSGKR 10
S GD PSSSC S SG R
Sbjct: 280 SPGDEAPSSSCQSSVSGHR 298
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 180 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 311
++KM + T + +H LPK+ E + LS CF +V
Sbjct: 1251 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNV 1294
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 180 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 311
++KM + T + +H LPK+ E + LS CF +V
Sbjct: 1249 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNV 1292
>10_02_0105 - 5345149-5347833
Length = 894
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 210 VIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVGD 317
VIR++ +YNR+ + + S P FR+ D
Sbjct: 113 VIRKEISEIFERYNRYNAVNSSTSTEAQPIFREDED 148
>02_05_0258 +
27222058-27223198,27223297-27223460,27224399-27224575,
27224713-27224761,27224991-27225793
Length = 777
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 30 GGMKRKDMRHHKNVGLGFKTPREAIEG 110
GG+ R+ H NV TPR A +G
Sbjct: 314 GGVARQQTPAHGNVAASVPTPRRAADG 340
>02_02_0485 + 10853712-10854686
Length = 324
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 304 LKQGDKCTDMFLCRFSNLLYL 242
+K GD C MFLC ++LY+
Sbjct: 265 IKVGDDCEFMFLCVDGDVLYM 285
>01_06_0711 +
31388369-31388799,31388907-31389079,31389852-31389937,
31390041-31390090,31390598-31390665,31391490-31391674,
31391884-31391970,31392075-31392169,31392509-31392635
Length = 433
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 207 IVIRRDYLHYLPKYNRFEKRHRNMSVHLSP 296
I+I L L KY+RF+K HRN + +P
Sbjct: 380 IIIFGVSLFNLYKYHRFKKGHRNKNCDKNP 409
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,238,093
Number of Sequences: 37544
Number of extensions: 163853
Number of successful extensions: 397
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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