Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301H06f
(334 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.) 161 2e-40
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38) 28 2.2
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 27 3.8
SB_28252| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31) 26 6.6
SB_19683| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_9023| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 161 bits (390), Expect = 2e-40
Identities = 78/119 (65%), Positives = 92/119 (77%), Gaps = 16/119 (13%)
Frame = +3
Query: 3 QATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------REAIEGTYIDKKCP 134
QA +F NRK + K+KD+R +NVGLGFKTP REAIEGTYIDKKCP
Sbjct: 12 QAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIEGTYIDKKCP 71
Query: 135 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 311
FTGNVSIRGRILTG+ + MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++ H SPCFRD+
Sbjct: 72 FTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLAAHCSPCFRDI 130
>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 120 QCRYPQSPLWEF*SLNQHSYGDACP 46
+C QS LWE SL QH Y + P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529
>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
Length = 525
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 165 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 302
I+ VV K K + VI RD+ Y ++ +R VH SP F
Sbjct: 64 IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109
>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 329 QXSAISHVPEARRQMYGHVPVPFLEP 252
+ +A HV +A R +G++P+P L P
Sbjct: 76 ETNACGHVDQACRSFHGNLPLPVLAP 101
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 3 QATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKK-CPFTGNVSIRGRILTGV 179
+ T ++RK K+K+ + KN+ K PR T++ + G V++R R G
Sbjct: 221 KVTSRVSRKIDSKKKNKQRRKNLRALRKAPRRPAPVTHLSARGADVDGAVALRARARAGN 280
Query: 180 VQK 188
Q+
Sbjct: 281 AQR 283
>SB_28252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +3
Query: 234 YLPKYNRFE--KRHRNMSVHLSPCF 302
Y K++RF ++RN S+H+SP F
Sbjct: 33 YSSKFHRFNIFHKYRNFSLHISPVF 57
>SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)
Length = 332
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 144 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMS 281
N++IR + + + +Q + R DY+ + ++ K HR++S
Sbjct: 148 NIAIRAVGIGKEIDERALQTLVSNRNDYIFRVGSFDALSKLHRSLS 193
>SB_19683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 96 EAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRR 221
E I+ D+ CP + IR + V+ K IV+RR
Sbjct: 232 EDIQELGFDRDCPIGNDNDIRDAVKNEVISDEKQSMFIVVRR 273
>SB_9023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 202 ELS*SAAITFTTYPNTIGSRNGTGTCPYICRLASGTWE 315
+L ++A T + T+ R G+ TCP ++ S W+
Sbjct: 383 QLQCTSAKTLNEHVVTVHYRQGSYTCPLCGKVLSNNWD 420
>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 235 TYPNTIGSRNGTGTCPYICRLASGTWEIADXC 330
T+P+TIG C + LA+G ++ D C
Sbjct: 795 THPDTIGVNVPATACVNLNNLANGCYQSIDIC 826
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,473,628
Number of Sequences: 59808
Number of extensions: 180721
Number of successful extensions: 465
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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