Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H06f
         (334 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for ...   179   2e-45
BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.       179   2e-45
BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11 p...   179   2e-45
BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11 p...   179   2e-45
BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11 p...   179   2e-45
BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.       179   2e-45
BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11 p...   179   2e-45
BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11 p...   179   2e-45
AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11 p...   179   2e-45
AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11 p...    93   1e-19
AF070550-1|AAC28638.1|  342|Homo sapiens cote1 protein.                28   6.0  

>X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for
           ribosomal protein S11. ).
          Length = 158

 Score =  179 bits (435), Expect = 2e-45
 Identities = 84/108 (77%), Positives = 94/108 (87%), Gaps = 5/108 (4%)
 Frame = +3

Query: 3   QATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 167
           Q T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRI
Sbjct: 13  QPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRI 72

Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 311
           L+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 73  LSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120


>BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score =  179 bits (435), Expect = 2e-45
 Identities = 84/108 (77%), Positives = 94/108 (87%), Gaps = 5/108 (4%)
 Frame = +3

Query: 3   QATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 167
           Q T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRI
Sbjct: 13  QPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRI 72

Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 311
           L+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 73  LSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120


>BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  179 bits (435), Expect = 2e-45
 Identities = 84/108 (77%), Positives = 94/108 (87%), Gaps = 5/108 (4%)
 Frame = +3

Query: 3   QATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 167
           Q T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRI
Sbjct: 13  QPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRI 72

Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 311
           L+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 73  LSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120


>BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  179 bits (435), Expect = 2e-45
 Identities = 84/108 (77%), Positives = 94/108 (87%), Gaps = 5/108 (4%)
 Frame = +3

Query: 3   QATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 167
           Q T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRI
Sbjct: 13  QPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRI 72

Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 311
           L+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 73  LSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120


>BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  179 bits (435), Expect = 2e-45
 Identities = 84/108 (77%), Positives = 94/108 (87%), Gaps = 5/108 (4%)
 Frame = +3

Query: 3   QATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 167
           Q T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRI
Sbjct: 13  QPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRI 72

Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 311
           L+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 73  LSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120


>BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score =  179 bits (435), Expect = 2e-45
 Identities = 84/108 (77%), Positives = 94/108 (87%), Gaps = 5/108 (4%)
 Frame = +3

Query: 3   QATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 167
           Q T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRI
Sbjct: 13  QPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRI 72

Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 311
           L+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 73  LSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120


>BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  179 bits (435), Expect = 2e-45
 Identities = 84/108 (77%), Positives = 94/108 (87%), Gaps = 5/108 (4%)
 Frame = +3

Query: 3   QATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 167
           Q T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRI
Sbjct: 13  QPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRI 72

Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 311
           L+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 73  LSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120


>BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  179 bits (435), Expect = 2e-45
 Identities = 84/108 (77%), Positives = 94/108 (87%), Gaps = 5/108 (4%)
 Frame = +3

Query: 3   QATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 167
           Q T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRI
Sbjct: 13  QPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRI 72

Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 311
           L+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 73  LSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120


>AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  179 bits (435), Expect = 2e-45
 Identities = 84/108 (77%), Positives = 94/108 (87%), Gaps = 5/108 (4%)
 Frame = +3

Query: 3   QATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 167
           Q T+F N+K  +     K K  R++KN+GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRI
Sbjct: 13  QPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRI 72

Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 311
           L+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 73  LSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120


>AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11
           protein.
          Length = 83

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 41/45 (91%), Positives = 43/45 (95%)
 Frame = +3

Query: 177 VVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 311
           VV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 1   VVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 45


>AF070550-1|AAC28638.1|  342|Homo sapiens cote1 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 81  SLNQHSYGDACPSSSCHLSCSGKRWPV 1
           SL+  S GD   SSSC +SC    W V
Sbjct: 291 SLHLRSCGDLSSSSSCGVSCLAAGWSV 317


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,767,978
Number of Sequences: 237096
Number of extensions: 867265
Number of successful extensions: 1769
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1769
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1736741460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)