Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H06f
         (334 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   144   1e-35
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr...    26   5.7  
Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical p...    26   5.7  
Z68270-10|CAA92572.2|  459|Caenorhabditis elegans Hypothetical p...    26   5.7  
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase...    26   5.7  
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi...    26   5.7  
AY305838-1|AAR11983.1|  459|Caenorhabditis elegans nuclear recep...    26   5.7  
AF083227-1|AAD03685.1|  290|Caenorhabditis elegans nuclear recep...    26   5.7  
Z81571-6|CAB04616.1|  460|Caenorhabditis elegans Hypothetical pr...    26   7.5  
Z48621-5|CAA88543.1|  136|Caenorhabditis elegans Hypothetical pr...    26   7.5  
Z48621-4|CAA88542.1|  160|Caenorhabditis elegans Hypothetical pr...    26   7.5  
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr...    25   10.0 
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.        25   10.0 
EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.      25   10.0 
AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical...    25   10.0 
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    25   10.0 

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  144 bits (350), Expect = 1e-35
 Identities = 67/106 (63%), Positives = 80/106 (75%), Gaps = 3/106 (2%)
 Frame = +3

Query: 3   QATVFLNRKGGM---KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILT 173
           Q TV LN K  +    +K  R+ + VGLGFK PR+A+EGTYIDKKCP+ GNV IRG ILT
Sbjct: 12  QPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWAGNVPIRGMILT 71

Query: 174 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 311
           GVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+  H SP FRD+
Sbjct: 72  GVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDI 117


>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
           protein ZK1067.1 protein.
          Length = 1323

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 75  NQHSYGDACPSSSCHLSCSGKRW 7
           +QH Y +    + CH SC+ K W
Sbjct: 207 HQHCYQNGKSMAKCHESCNDKCW 229


>Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical
           protein ZC410.1b protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 87  TPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKR 266
           T  + I  T+ + +CPFT N  +R         +  ++   V+  DY    P++N F   
Sbjct: 149 TGMDFILDTHANLQCPFTVN-DLRPHDYRNF--RGMLRHDFVMLFDYATRFPEFNSFTSH 205

Query: 267 HRNM 278
            +NM
Sbjct: 206 EKNM 209


>Z68270-10|CAA92572.2|  459|Caenorhabditis elegans Hypothetical
           protein ZC410.1a protein.
          Length = 459

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 87  TPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKR 266
           T  + I  T+ + +CPFT N  +R         +  ++   V+  DY    P++N F   
Sbjct: 214 TGMDFILDTHANLQCPFTVN-DLRPHDYRNF--RGMLRHDFVMLFDYATRFPEFNSFTSH 270

Query: 267 HRNM 278
            +NM
Sbjct: 271 EKNM 274


>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
           protein.
          Length = 1323

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 75  NQHSYGDACPSSSCHLSCSGKRW 7
           +QH Y +    + CH SC+ K W
Sbjct: 207 HQHCYQNGKSMAKCHESCNDKCW 229


>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
           kinase protein.
          Length = 1374

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 75  NQHSYGDACPSSSCHLSCSGKRW 7
           +QH Y +    + CH SC+ K W
Sbjct: 258 HQHCYQNGKSMAKCHESCNDKCW 280


>AY305838-1|AAR11983.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-11 protein.
          Length = 459

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 87  TPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKR 266
           T  + I  T+ + +CPFT N  +R         +  ++   V+  DY    P++N F   
Sbjct: 214 TGMDFILDTHANLQCPFTVN-DLRPHDYRNF--RGMLRHDFVMLFDYATRFPEFNSFTSH 270

Query: 267 HRNM 278
            +NM
Sbjct: 271 EKNM 274


>AF083227-1|AAD03685.1|  290|Caenorhabditis elegans nuclear receptor
           NHR-11 protein.
          Length = 290

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 87  TPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKR 266
           T  + I  T+ + +CPFT N  +R         +  ++   V+  DY    P++N F   
Sbjct: 166 TGMDFILDTHANLQCPFTVN-DLRPHDYRNF--RGMLRHDFVMLFDYATRFPEFNSFTSH 222

Query: 267 HRNM 278
            +NM
Sbjct: 223 EKNM 226


>Z81571-6|CAB04616.1|  460|Caenorhabditis elegans Hypothetical
           protein M01G12.7 protein.
          Length = 460

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 171 TGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHR 272
           +G VQ+ +  + +V+R   ++YL K ++  K+HR
Sbjct: 104 SGSVQQKENIQILVVRVGGVYYLAKLSKENKKHR 137


>Z48621-5|CAA88543.1|  136|Caenorhabditis elegans Hypothetical
           protein R07B1.6 protein.
          Length = 136

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 241 PNTIGSRNGTGTCPYICRLASGTW 312
           P  +G+ NG GT   +    +G W
Sbjct: 97  PTDVGTENGVGTANVVMNCVNGQW 120


>Z48621-4|CAA88542.1|  160|Caenorhabditis elegans Hypothetical
           protein R07B1.5 protein.
          Length = 160

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 241 PNTIGSRNGTGTCPYICRLASGTW 312
           P  +G+ NG GT   +    +G W
Sbjct: 121 PTDVGTENGVGTANVVMNCVNGEW 144


>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical
           protein F29D10.4 protein.
          Length = 1100

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +3

Query: 180 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 305
           V+ + ++  I +RR    Y   +++F +R+  +S    PCF+
Sbjct: 605 VEYLGLRENIRVRRAGFAYRRAFDKFAQRYAIVSPQTWPCFQ 646


>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
          Length = 1036

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +3

Query: 180 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 305
           V+ + ++  I +RR    Y   +++F +R+  +S    PCF+
Sbjct: 542 VEYLGLRENIRVRRAGFAYRRAFDKFAQRYAIVSPQTWPCFQ 583


>EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.
          Length = 801

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 144 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR-FEKRHRNMSVHLSPCFRDV 311
           +V + G+I      KMK  R+IV R   L  +  + R F +  R  +V    CF  V
Sbjct: 191 DVKMLGKIQNLCFSKMKDSRSIVARAAQLVCIDAFRRKFWRDARTANVIAQACFHKV 247


>AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical
           protein Y39B6A.14 protein.
          Length = 801

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 144 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR-FEKRHRNMSVHLSPCFRDV 311
           +V + G+I      KMK  R+IV R   L  +  + R F +  R  +V    CF  V
Sbjct: 191 DVKMLGKIQNLCFSKMKDSRSIVARAAQLVCIDAFRRKFWRDARTANVIAQACFHKV 247


>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 181 TTPVRMRPRIETLPVKGH 128
           T PVR  P+   LPVKGH
Sbjct: 196 TKPVRDVPQSPVLPVKGH 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,653,311
Number of Sequences: 27780
Number of extensions: 135571
Number of successful extensions: 357
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)