Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H06f
         (334 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.24 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   3.0  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   6.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   9.1  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               20   9.1  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.0 bits (52), Expect = 0.24
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 159 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSP 296
           G +L GVV K KM R  +    + H +   N+FE     + +H+SP
Sbjct: 590 GMVLAGVVGK-KMPRYCL----FGHNVTLANKFESLSEPLRIHVSP 630


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +2

Query: 11  RFPEQERWHEEEGHAS 58
           R P +  WH  E H S
Sbjct: 149 RTPTEASWHSPEAHIS 164


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II
          large subunit protein.
          Length = 296

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 88 VLKPKPTFLW*RMSFLFMP 32
          +LKPKP +   ++S L +P
Sbjct: 40 ILKPKPLWTGKQISSLIIP 58


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 237 LPKYNRFEKRHRNMSVHLS 293
           LP++     R R+ ++HLS
Sbjct: 185 LPQFRVLGHRQRHSTIHLS 203


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +3

Query: 39  KRKDMRHHKNVGLGFKTPREAIEGTYIDKKC 131
           K  +M + KN+ +  K   E I       KC
Sbjct: 98  KLVEMANRKNISIDVKMLSECINANKSTDKC 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,950
Number of Sequences: 438
Number of extensions: 1418
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)