Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301H06f
(334 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 144 1e-35
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 142 5e-35
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 138 9e-34
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 31 0.15
At4g35720.1 68417.m05069 expressed protein contains Pfam profile... 31 0.25
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si... 30 0.33
At4g26980.1 68417.m03882 expressed protein 27 2.4
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit... 27 2.4
At1g65860.1 68414.m07473 flavin-containing monooxygenase family ... 26 5.5
At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase fa... 26 7.2
At1g68750.1 68414.m07859 phosphoenolpyruvate carboxylase family ... 26 7.2
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila... 25 9.5
At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger) fa... 25 9.5
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 144 bits (350), Expect = 1e-35
Identities = 68/106 (64%), Positives = 79/106 (74%), Gaps = 5/106 (4%)
Frame = +3
Query: 3 QATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 167
Q VFL+ K K K R KN+GLGFKTPREAIEGTYID+KCPFTG VSIRGRI
Sbjct: 12 QPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSIRGRI 71
Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 305
L+G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR
Sbjct: 72 LSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR 117
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 142 bits (344), Expect = 5e-35
Identities = 66/106 (62%), Positives = 77/106 (72%), Gaps = 5/106 (4%)
Frame = +3
Query: 3 QATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 167
Q VFL+ K K K R KN+GLGFKTPREAI+G Y+DKKCPFTG VSIRGRI
Sbjct: 12 QPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRI 71
Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 305
L G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR
Sbjct: 72 LAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR 117
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 138 bits (334), Expect = 9e-34
Identities = 66/106 (62%), Positives = 77/106 (72%), Gaps = 5/106 (4%)
Frame = +3
Query: 3 QATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 167
Q VFL+ K G KR R KN+GLGFKTPREAI+G YID KCPFTG VSIRGRI
Sbjct: 12 QPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSIRGRI 71
Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 305
L G KMQRTI++RR+YLH++ KY R+EKRH N+ H+SPCFR
Sbjct: 72 LAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR 117
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 31.5 bits (68), Expect = 0.15
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 174 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVGD 317
G V KMQ+++V+ D L + YNR+ KR H ++GD
Sbjct: 6 GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGD 53
>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function
Length = 325
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 15 FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 143
FL+ G+K K+ HHK G+ K ++ IE + +K+ TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245
>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GB:Y08858 from
[Nicotiana plumbaginifolia]
Length = 105
Score = 30.3 bits (65), Expect = 0.33
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 162 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVGD 317
+ + G V KMQ ++V+ D L + YNR+ KR H ++GD
Sbjct: 2 KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEKDSCNIGD 53
>At4g26980.1 68417.m03882 expressed protein
Length = 343
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 84 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 188
+ PREA+ +D+ PF ++ + ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274
>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 206
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 159 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 275
G+++ GVV+ +R + + R + L NRF RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206
>At1g65860.1 68414.m07473 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenase FMO3 (dimethylaniline
monoxygenase (N-oxide forming) 3) GI:349533 [SP|P32417]
from Oryctolagus cuniculus, [SP|P97501] from Mus
musculus; contains Pfam profile PF00743 Flavin-binding
monooxygenase-like domain
Length = 459
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 20 EQERWHEEEGHASP*ECWFRLQNSQRG 100
E W EE H SP E W R+Q +RG
Sbjct: 390 EYLNWIAEECHCSPVENW-RIQEVERG 415
>At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|Q9Y2Q0], Mus musculus [SP|P70704]; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1243
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -3
Query: 332 EQXSAISHVPEARRQMYGHVPVP 264
EQ ++H+P R +M+G+ +P
Sbjct: 469 EQGEEVTHLPRTRGRMHGYAKMP 491
>At1g68750.1 68414.m07859 phosphoenolpyruvate carboxylase family
protein / PEP carboxylase family protein similar to
SP|P51059 Phosphoenolpyruvate carboxylase 2 (EC
4.1.1.31) (PEPCASE) {Zea mays}; contains Pfam profile
PF00311: phosphoenolpyruvate carboxylase
Length = 1032
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +3
Query: 168 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVH 287
LT + KM ++ + + R + H L + HR VH
Sbjct: 73 LTSEISKMPLEEALTLARTFTHSLNLMGIADTHHRMHKVH 112
>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
to SP|P36175 O-sialoglycoprotein endopeptidase (EC
3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
contains Pfam profile PF00814: Glycoprotease family
Length = 480
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = +3
Query: 51 MRHHKNVGL---GFKTP-REAIEGTYIDKKCP 134
M++HK+ G KT R AIE ID KCP
Sbjct: 286 MKYHKDCNFSYAGLKTQVRLAIEAKEIDAKCP 317
>At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 170 EDAXADRNVASEGTLLVNVGTLNRLSG 90
ED DRN A+ +L N+ T NRL G
Sbjct: 63 EDTIRDRNDATVKEVLGNLETYNRLFG 89
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,262,729
Number of Sequences: 28952
Number of extensions: 127924
Number of successful extensions: 275
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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