Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H05f
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     28   0.80 
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    25   4.3  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   4.3  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   4.3  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.6  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   5.6  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   5.6  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   7.4  

>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 38  SLPTRTSPRCDAGSARSQSELFNDTSQS 121
           S+PT TSP  +  + RS + + N+T QS
Sbjct: 231 SVPTTTSPNNENNALRSTANVINNTRQS 258


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 324 KTFYHHANFLPQQIL 368
           +TF HHAN  P++IL
Sbjct: 13  RTFAHHANLTPRKIL 27


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 50  RTSPRCDAGSARSQSELFNDTSQSPTRRRALAQVQPERGGSN 175
           RT P     S  S+SEL N+T+   +RR  L ++  +R G N
Sbjct: 16  RTLPALHGSSFSSRSELDNNTNSKISRR--LRELVCQRMGEN 55


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 11  TTEHPSGATSLPTRTSPRCDAGSARSQSELFNDT 112
           TT  P+  T+  TRT+PR  A +  S     N T
Sbjct: 149 TTSTPTTTTARTTRTTPRPTATTNTSNQSTSNST 182


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 92  SELFNDTSQSPTRRRALAQVQPERGGSNIGSPCWRRGLV 208
           S +++ TS SP  R      +    GS+ GSP WR GL+
Sbjct: 714 SSIYSSTS-SPYIRDQYFLNRMLTNGSHNGSPSWRDGLL 751


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 13   YGAPVWCHVLTHENVAA 63
            YG    C +LTHEN++A
Sbjct: 1011 YGPSFICKLLTHENISA 1027


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 308 TCADSQDILPPCKLLTATNLTSHHANYNFTG 400
           +C  + +    C LL+ ++  SH   Y++TG
Sbjct: 498 SCVTTDEAFNVCDLLSISDCLSHDFPYSYTG 528


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 334 TTMQTSYRNKSYQPPRKLQF 393
           ++ QT  RN SYQP   L+F
Sbjct: 51  SSFQTPLRNGSYQPKGSLEF 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,596,709
Number of Sequences: 5004
Number of extensions: 26837
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)