Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301H05f
(462 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0029 + 14270945-14271364,14271449-14272486 31 0.60
02_05_0943 + 32976990-32976996,32977119-32977464,32977586-329777... 29 1.8
01_01_1137 + 9017211-9018584 29 1.8
10_01_0028 - 359988-359996,360228-360332,360415-360536,360676-36... 29 2.4
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462... 28 3.2
12_01_0386 + 3023431-3023522,3023951-3024097,3024227-3024308,302... 28 4.2
01_02_0098 - 11087875-11089110,11091744-11092022 28 4.2
12_02_1120 - 26228618-26229403 27 5.6
09_02_0201 + 5728377-5728584,5729044-5729153,5729231-5729286,572... 27 5.6
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187... 27 5.6
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557... 27 7.3
09_06_0239 - 21794691-21795986 27 7.3
05_04_0129 - 18283862-18284328,18284382-18284580 27 7.3
01_07_0337 + 42838260-42838344,42838972-42839084,42839652-428397... 27 7.3
08_01_0371 - 3284103-3284582 27 9.7
04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798 27 9.7
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 27 9.7
>10_08_0029 + 14270945-14271364,14271449-14272486
Length = 485
Score = 30.7 bits (66), Expect = 0.60
Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
Frame = -1
Query: 375 WLVRFVAVRSLHGGKMSCESAQVAGGETS---AVAAHPVRENRADRLDGTEAGRRVRQTT 205
WL F+A + GG+ S E Q GG+ + VAA RE + + A
Sbjct: 7 WLRSFLAGKKDGGGRRSGERQQHGGGDATPAVEVAAASTREKKRWSFRRSSASASAAAMG 66
Query: 204 RPRLQHGLPILEPPRSGCTCARAR-RLVGDCEVSLNNSDCDRALPASQRGD 55
+P EP SG R R V D E ++ A+ + GD
Sbjct: 67 KPAAVTAPSTPEPSVSGLASVSERARDVADLEGQSKHAMAVAAVATAAEGD 117
>02_05_0943 +
32976990-32976996,32977119-32977464,32977586-32977796,
32977997-32978072,32978175-32978277,32978601-32978669,
32978785-32978821,32978904-32978978,32979052-32979103,
32979188-32979232,32979342-32979442
Length = 373
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -1
Query: 288 AVAAHPVRENRADRL--DGTEAGRRVRQTTRPRLQHGLPILEPPRSGCTCARARRLV 124
A A P EN + ++ D GR +T P QH L E SGCTC R++
Sbjct: 108 AAATVPPFENISPKMLADSMTLGRDNGRTREPVDQHSL---EENHSGCTCVAVPRII 161
>01_01_1137 + 9017211-9018584
Length = 457
Score = 29.1 bits (62), Expect = 1.8
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 354 VRSLHGGKMSCESAQVAGGETSAVAAHPVREN-RADRLDGTEA--GRRVRQTTRPRLQHG 184
++ L G + + +VAGG V AHP+ E+ R R+ G A G TR G
Sbjct: 264 IKRLQSGIRARAAGKVAGGRVVRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTR---CSG 320
Query: 183 LPILEPPRSGCTCARA 136
I RSG C RA
Sbjct: 321 EGIYFAARSGRLCGRA 336
>10_01_0028 -
359988-359996,360228-360332,360415-360536,360676-360763,
360988-361056,361132-361461,361544-361610,361695-361753,
361838-362056,362224-362289,362370-362500,362683-362782,
362864-363001,363111-363218,363627-363723,363806-364257
Length = 719
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 23 PSGATSLPTRTSPRCDAGSARSQSELFNDTSQSPTRRRALAQVQPER 163
PS A + PTRTS R A SA + ++ ++ S T RR A+ +P +
Sbjct: 6 PSSAAA-PTRTSTRKRAASASASAKATDEPSTKRT-RRPKAETKPRK 50
>05_04_0389 -
20845490-20845600,20845697-20846006,20846097-20846242,
20846319-20846426,20846508-20846615,20846997-20847109,
20847340-20847437,20847530-20847714,20847811-20847953,
20848293-20848377,20848486-20848624,20848686-20848780,
20848894-20849037,20849114-20849206,20849310-20849376,
20849529-20849641,20849750-20849845,20853885-20854058
Length = 775
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 232 LRTVEAICPVLADWVGRDRGSLTSGYLCRLTRHFTTMQTSYRNKSYQPPRKLQFYGF 402
LR E I +A ++ R +GS S Y+ +F SY SY L Y F
Sbjct: 281 LRAPEDIAFAVALFIARKKGSFVSYYMYHGGTNFGRFAASYVTTSYYDGAPLDEYDF 337
>12_01_0386 +
3023431-3023522,3023951-3024097,3024227-3024308,
3024801-3024842,3024930-3024989,3025430-3027109,
3027239-3027340,3027461-3027604,3027704-3027829,
3027933-3028100
Length = 880
Score = 27.9 bits (59), Expect = 4.2
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Frame = -1
Query: 261 NRADRLDGTEAGRRVRQTTRPRLQHGLPILEPPRSGCTCARARRLVGDCEVSLNNSDCDR 82
NR+ + A + Q + R HGLP + P C AR L S N
Sbjct: 161 NRSSMVASASAKNDLSQKVQSRSLHGLPSIHPYEQ-CYGHDARAL--SSSTSANTGRNTS 217
Query: 81 ALPASQRGDVLVGKDV--APD 25
L +QR D + + V APD
Sbjct: 218 LLKVAQRNDQAIREQVLYAPD 238
>01_02_0098 - 11087875-11089110,11091744-11092022
Length = 504
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 296 RLPRSR-PTQSARTGQIASTVRRPADGS 216
RLP+S+ P + AR Q AS RRP DG+
Sbjct: 12 RLPQSQAPRRQARGLQYASPERRPLDGA 39
>12_02_1120 - 26228618-26229403
Length = 261
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -1
Query: 303 GGETSAVAAHPVRENRADRLDGTEAGRRVRQTTRPRLQHGLPILEPP 163
GGE AA P R + + T R R+ +R H ++ PP
Sbjct: 140 GGEVVQAAARPTRLTASSEAERTTTMARRRRRSRSHSSHHALMMTPP 186
>09_02_0201 +
5728377-5728584,5729044-5729153,5729231-5729286,
5729396-5729480,5729550-5729597,5729723-5729797,
5729893-5730004,5730371-5730536,5730579-5730630,
5730729-5730786,5731029-5731127,5731219-5731349
Length = 399
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 195 LQHGLPILEPPRSGCTCARAR 133
LQH LPI+ P RS +C+ +R
Sbjct: 222 LQHFLPIMNPVRSESSCSSSR 242
>03_02_0981 +
12917195-12917572,12917661-12917818,12918732-12918765,
12918942-12919074,12919167-12919221,12919281-12920064,
12920440-12920769,12920788-12920895,12921259-12921678,
12921775-12921847,12922291-12922376,12922873-12922992,
12923086-12923156,12923350-12923449
Length = 949
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 383 NYNFTGSTSLTRCYSHTEEPTAN 451
N F GS++ C SH+EEP N
Sbjct: 740 NCGFEGSSTELSCSSHSEEPKVN 762
>11_01_0682 -
5575297-5575308,5575391-5575516,5575779-5575885,
5575911-5576013,5576122-5576187,5576378-5576461,
5577448-5577522,5577615-5577668,5577752-5577895,
5578632-5578685,5578877-5578981,5579076-5579173,
5579660-5579729,5580444-5580566,5580647-5580727,
5580996-5581476,5581684-5581816,5582550-5582598,
5582704-5582892,5583642-5583703,5583762-5585316
Length = 1256
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 372 LVRFVAVRSLH-GGKMSCESAQVAGGETSAVAAHPV 268
+VR + +RSL G + S VAGG AAHPV
Sbjct: 1 MVRLLGLRSLSFGPEESPREITVAGGGGGDAAAHPV 36
>09_06_0239 - 21794691-21795986
Length = 431
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 290 EVSPPATC-ADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTE 436
+ P +C A + D+ P K T NLTS NY ++ S T Y TE
Sbjct: 115 QCQPCLSCVAQAGDMYDPNKTETYANLTSSSYNYTYS-KQSFTSGYFATE 163
>05_04_0129 - 18283862-18284328,18284382-18284580
Length = 221
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -1
Query: 309 VAGGETSAVAAHP-VRENRADRLDGTEAGRRVRQTTRPRLQHGLPILEPP 163
V+GGE + H +RE + D AG+ RPR H P PP
Sbjct: 111 VSGGERQLLLQHQHLREQQRAGGDQLGAGQEQGGHERPRSSHPPPASSPP 160
>01_07_0337 +
42838260-42838344,42838972-42839084,42839652-42839729,
42839831-42840054,42840084-42840128,42840156-42840264
Length = 217
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 238 TVEAICPVLADWVGRDRGS 294
T A+CP+ AD +GRD G+
Sbjct: 63 TRNAVCPLCADNIGRDMGA 81
>08_01_0371 - 3284103-3284582
Length = 159
Score = 26.6 bits (56), Expect = 9.7
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = -1
Query: 303 GGETSAVAAHPVRENRADRLDGTEAGRRVRQTTRPRLQHGLPILEPPRSGCTCARARRL 127
GGE A A+ R A+ R VR+ R G P + P R C R L
Sbjct: 32 GGEAEASASQAWRRGDANVHSDVRVRRGVRRPLRRTATGGAPPMLPQRKRCPTNRRAML 90
>04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798
Length = 273
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Frame = +1
Query: 202 SRRLADPSAGLRTVEAICPVL-----ADWVGRDRGSLTSG 306
S L +P+AGL V PV+ ADW D G+ +G
Sbjct: 170 SSSLTEPAAGLAAVRPHAPVIPKVMFADWFDMDYGTSLAG 209
>03_02_0568 +
9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 26.6 bits (56), Expect = 9.7
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = -1
Query: 363 FVAVRSLHGGKMSCESAQ-VAGGETSAVAAHPVRENRADRLDGTEAGRR-VRQTTRPRLQ 190
F+ LH + E A+ + G +A ++ R TEA + + R +L
Sbjct: 435 FIISNLLHAEQSIVERAKDIRGALENASGDISALVDKLGRQSNTEAENKGLLFDFRSQLD 494
Query: 189 HGLPILEPPRSGCTCARARRL 127
HGL +L GC C + + L
Sbjct: 495 HGLDLLHDTVVGCVCEQRQFL 515
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,188,140
Number of Sequences: 37544
Number of extensions: 234576
Number of successful extensions: 1048
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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