Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H05f
         (462 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)                    27   5.7  
SB_37120| Best HMM Match : EB (HMM E-Value=4.2)                        27   5.7  
SB_37524| Best HMM Match : p450 (HMM E-Value=0)                        27   7.6  
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)           27   7.6  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_8818| Best HMM Match : I-set (HMM E-Value=0)                        27   7.6  
SB_23735| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_15702| Best HMM Match : Ded_cyto (HMM E-Value=0)                    27   10.0 
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      27   10.0 
SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_29202| Best HMM Match : SH3_1 (HMM E-Value=3.9e-12)                 27   10.0 
SB_24482| Best HMM Match : KID (HMM E-Value=0.045)                     27   10.0 
SB_13655| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 

>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
          Length = 932

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 293 LPRSRPTQSARTGQIASTVRRPADGSAKRRDHASST 186
           +PRS   Q++R     ST+ R  D  A R   ++ST
Sbjct: 588 IPRSTDAQASRAATSNSTIPRSTDAQASRAATSNST 623


>SB_37120| Best HMM Match : EB (HMM E-Value=4.2)
          Length = 376

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 359 TNLTSHHANYNFTGS-TSLTRCYSHTEEPTANT 454
           T++T  H    +TGS TS T+ +++TE PT+ T
Sbjct: 25  TSITKAHT---YTGSPTSKTKAHTYTESPTSKT 54


>SB_37524| Best HMM Match : p450 (HMM E-Value=0)
          Length = 362

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 5   DGTTEHPSGATSLPTRTSPRCDAGSARSQSELF 103
           +G  + P G T LP    PR   G   ++SELF
Sbjct: 287 EGKFKAPVGGTFLPFGAGPRVCLGEVLARSELF 319


>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
          Length = 773

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 240 GTEAGRRVRQTTRPRLQHGLPILEPPRSGCTC 145
           G E+G   ++  RPR+  G P++  P  G +C
Sbjct: 478 GLESGNFSQKVDRPRVVIGFPVVGSPVDGKSC 509


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 275  WAATAEVSPPATCADSQDILPPCKLLTATN 364
            W A +E SPP T  DS D     K++   N
Sbjct: 3042 WTAMSEASPPWTTIDSSDTEEEDKMVPVKN 3071


>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2787

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = -1

Query: 354  VRSLHGGKMSCESAQVAGGETSAVAAHPVRENRADRLDGTEAGRRV 217
            +R    G   C    + G ETS           A R DGT+ G+ V
Sbjct: 2382 LRPEDAGTYKCVITNLLGVETSEAVIRVQEREHAPRFDGTDLGQSV 2427


>SB_23735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 186 GLPILEPPRSGCTCARARRLVGDCEVSLNNSDCDRALPASQRGDVLVGKDVAP 28
           G+  + PPR+     R        + S NNS+CD    AS+   VL+ K V P
Sbjct: 64  GVVDMPPPRNTAQTIRRNSKKDSTQSSPNNSECDVHENASK--PVLLPKKVTP 114


>SB_15702| Best HMM Match : Ded_cyto (HMM E-Value=0)
          Length = 331

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 217 DPSAGLRTVEAICPVLADWVGRDRGSLTSGY 309
           DP+A +R     C  +  W+  DRG++T GY
Sbjct: 273 DPTAVVRCSWVDCTRIVGWLNTDRGAIT-GY 302


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
 Frame = +2

Query: 311 CADSQDI---LPPCKLLT---ATNLTSHHANYNFTGSTSLTRCYSHTE-EPTANTC 457
           C   +D+   L  C L+T   +  +  +HA   +TGST   RC S ++  P A  C
Sbjct: 645 CEKKRDLTFTLGKCGLITTPCSARICRYHAKCLYTGSTLECRCPSESDCLPAAKVC 700


>SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 235 RTVEAICPVLADWVGR-DRGSLTSGYLCRLTRHFTTM 342
           R +EA+C V+ DW    DRG  T  ++    + F ++
Sbjct: 525 RHLEALCFVIKDWASALDRGLQTDAFVLDFAKAFDSV 561


>SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 904

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = +2

Query: 11  TTEHPSGATSL--PTRTSPR 64
           T  HP GATSL  PT +SPR
Sbjct: 625 TFSHPMGATSLISPTHSSPR 644


>SB_29202| Best HMM Match : SH3_1 (HMM E-Value=3.9e-12)
          Length = 364

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 186 GLPILEPPRSGCTCARARRLVGDCEVSLNNSDCDRALPASQRGDVLVGKDVAP 28
           G+  + PPR+     R        + S NNS+CD    AS+   VL+ K V P
Sbjct: 303 GVVDMPPPRNTAQTIRRNSKKDSTQSSPNNSECDVHENASK--PVLLPKKVTP 353


>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
          Length = 1714

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 368 TSHHANYNFTGSTSLTRCYSHTEEPTANT 454
           T+ HA  N T +TS T   S+T +PT+NT
Sbjct: 57  TNTHATSN-THATSNTHATSNTPKPTSNT 84


>SB_13655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 17  EHPSGATSLPTRTSPRCDAGSARSQSELFNDTSQS 121
           +HP+  +S   R+SP   AG  RS  E+F+D+  +
Sbjct: 45  QHPTSPSSASPRSSPTRKAGLRRS-VEIFSDSDST 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,347,480
Number of Sequences: 59808
Number of extensions: 256796
Number of successful extensions: 1178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)