Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H05f
         (462 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.        29   5.9  
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su...    29   5.9  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    29   5.9  
AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein pro...    29   5.9  
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro...    29   5.9  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     29   5.9  
BC111984-1|AAI11985.1|  201|Homo sapiens KIAA0495 protein.             29   7.8  
BC093699-1|AAH93699.1|  201|Homo sapiens KIAA0495 protein.             29   7.8  

>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
          Length = 1022

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 8   GTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDT-SQSPTRRRALAQVQPERGGSNIGS 184
           G +   S AT   +R+      G +RS++     + S++PTRRR+ ++    RG S   +
Sbjct: 560 GRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRT 619

Query: 185 PCWRR 199
           P  RR
Sbjct: 620 PARRR 624


>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
           subunit SRm300 protein.
          Length = 2296

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 8   GTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDT-SQSPTRRRALAQVQPERGGSNIGS 184
           G +   S AT   +R+      G +RS++     + S++PTRRR+ ++    RG S   +
Sbjct: 560 GRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRT 619

Query: 185 PCWRR 199
           P  RR
Sbjct: 620 PARRR 624


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
           protein.
          Length = 2752

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 8   GTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDT-SQSPTRRRALAQVQPERGGSNIGS 184
           G +   S AT   +R+      G +RS++     + S++PTRRR+ ++    RG S   +
Sbjct: 560 GRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRT 619

Query: 185 PCWRR 199
           P  RR
Sbjct: 620 PARRR 624


>AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein
           protein.
          Length = 956

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 8   GTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDT-SQSPTRRRALAQVQPERGGSNIGS 184
           G +   S AT   +R+      G +RS++     + S++PTRRR+ ++    RG S   +
Sbjct: 525 GRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRT 584

Query: 185 PCWRR 199
           P  RR
Sbjct: 585 PARRR 589


>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
           protein.
          Length = 1262

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 8   GTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDT-SQSPTRRRALAQVQPERGGSNIGS 184
           G +   S AT   +R+      G +RS++     + S++PTRRR+ ++    RG S   +
Sbjct: 350 GRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRT 409

Query: 185 PCWRR 199
           P  RR
Sbjct: 410 PARRR 414


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 8   GTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDT-SQSPTRRRALAQVQPERGGSNIGS 184
           G +   S AT   +R+      G +RS++     + S++PTRRR+ ++    RG S   +
Sbjct: 608 GRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRT 667

Query: 185 PCWRR 199
           P  RR
Sbjct: 668 PARRR 672


>BC111984-1|AAI11985.1|  201|Homo sapiens KIAA0495 protein.
          Length = 201

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 90  SQSYSMIPHSLLRGGAP*RKCSRSAGAPIS 179
           SQS+S   H +L GG P  +CSR  GA ++
Sbjct: 104 SQSFSEASHRVLPGGGP--RCSRDFGAGVA 131


>BC093699-1|AAH93699.1|  201|Homo sapiens KIAA0495 protein.
          Length = 201

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 90  SQSYSMIPHSLLRGGAP*RKCSRSAGAPIS 179
           SQS+S   H +L GG P  +CSR  GA ++
Sbjct: 104 SQSFSEASHRVLPGGGP--RCSRDFGAGVA 131


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,329,802
Number of Sequences: 237096
Number of extensions: 1182996
Number of successful extensions: 3638
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3638
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)