Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H05f
         (462 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    28   2.8  
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    28   3.7  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    28   3.7  
AF098996-1|AAM34815.1|  523|Caenorhabditis elegans Hypothetical ...    27   6.5  
U44902-1|AAA93318.1|  483|Caenorhabditis elegans serine/threonin...    27   8.6  
AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical...    27   8.6  
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    27   8.6  
AF000263-10|AAM22070.1|  163|Caenorhabditis elegans Hypothetical...    27   8.6  
AF000263-9|AAO21391.2|  184|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    27   8.6  
AC024770-7|AAP13756.1|  411|Caenorhabditis elegans Checkpoint ki...    27   8.6  
AC024770-6|AAF59485.2|  503|Caenorhabditis elegans Checkpoint ki...    27   8.6  

>Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical
           protein R166.1 protein.
          Length = 502

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 287 AEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEPTANT 454
           A + P  T   S  + PP    TA   + +    NF+G+ S+TR   H   P ++T
Sbjct: 205 AGILPATTTNVSAAVPPPSSRATANVFSGNSIGLNFSGAASVTR---HLVVPPSST 257


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 168 PPRSGCTCARARRLVGDCEVSLN-NSDCD 85
           PP  GC C R +R V D E  +N +SD +
Sbjct: 59  PPMCGCGCGRKKRSVDDVEGVINMDSDVE 87


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 8   GTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDTSQS-PTRRRALAQVQPERGGSNIGS 184
           G++  PSG+++ P+ +S      S  S SEL N ++ S  T   +++   P    S+  S
Sbjct: 525 GSSTEPSGSSTEPSGSSTEPSGSSDSSSSELPNSSTDSGSTSEPSMSSEAPGASSSDFPS 584


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 8   GTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDTSQS-PTRRRALAQVQPERGGSNIGS 184
           G++  PSG+++ P+ +S      S  S SEL N ++ S  T   +++   P    S+  S
Sbjct: 525 GSSTEPSGSSTEPSGSSTEPSGSSDSSSSELPNSSTDSGSTSEPSMSSEAPGASSSDFPS 584


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 8   GTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDTSQS-PTRRRALAQVQPERGGSNIGS 184
           G++  PSG+++ P+ +S      S  S SEL N ++ S  T   +++   P    S+  S
Sbjct: 525 GSSTEPSGSSTEPSGSSTEPSGSSDSSSSELPNSSTDSGSTSEPSMSSEAPGASSSDFPS 584


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 8   GTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDTSQS-PTRRRALAQVQPERGGSNIGS 184
           G++  PSG+++ P+ +S      S  S SEL N ++ S  T   +++   P    S+  S
Sbjct: 525 GSSTEPSGSSTEPSGSSTEPSGSSDSSSSELPNSSTDSGSTSEPSMSSEAPGASSSDFPS 584


>AF098996-1|AAM34815.1|  523|Caenorhabditis elegans Hypothetical
           protein T11F1.7 protein.
          Length = 523

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 132 RLVGDCEVSLNNSDCDRALPASQRGDVLVGKDVAPDGCSVVPST 1
           RL  +  + +NN DC +A   S R ++   K   P    V   T
Sbjct: 478 RLTYNARLPINNQDCGKAQNLSSRLEISASKTFRPSNLRVFRGT 521


>U44902-1|AAA93318.1|  483|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 483

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 314 HR*PEVRLPRSRPTQSARTGQIASTVRRPADGSAKRR 204
           H   +V  P  RP + AR      T  + A+ SAKRR
Sbjct: 288 HNFGQVETPNGRPLKRARNNDENITCTQQAECSAKRR 324


>AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical
           protein T08B2.5f protein.
          Length = 838

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 305 PEVRLPRSRPTQSARTGQIASTVRRPADGSAKRR 204
           PE+ +PRS   +S+R+   A   RR    S  RR
Sbjct: 8   PEISIPRSGENKSSRSPSWAREARRSRSRSRDRR 41


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 305 PEVRLPRSRPTQSARTGQIASTVRRPADGSAKRR 204
           PE+ +PRS   +S+R+   A   RR    S  RR
Sbjct: 36  PEISIPRSGENKSSRSPSWAREARRSRSRSRDRR 69


>AF000263-10|AAM22070.1|  163|Caenorhabditis elegans Hypothetical
           protein T08B2.5d protein.
          Length = 163

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 305 PEVRLPRSRPTQSARTGQIASTVRRPADGSAKRR 204
           PE+ +PRS   +S+R+   A   RR    S  RR
Sbjct: 94  PEISIPRSGENKSSRSPSWAREARRSRSRSRDRR 127


>AF000263-9|AAO21391.2|  184|Caenorhabditis elegans Hypothetical
           protein T08B2.5e protein.
          Length = 184

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 305 PEVRLPRSRPTQSARTGQIASTVRRPADGSAKRR 204
           PE+ +PRS   +S+R+   A   RR    S  RR
Sbjct: 115 PEISIPRSGENKSSRSPSWAREARRSRSRSRDRR 148


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 305 PEVRLPRSRPTQSARTGQIASTVRRPADGSAKRR 204
           PE+ +PRS   +S+R+   A   RR    S  RR
Sbjct: 94  PEISIPRSGENKSSRSPSWAREARRSRSRSRDRR 127


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 305 PEVRLPRSRPTQSARTGQIASTVRRPADGSAKRR 204
           PE+ +PRS   +S+R+   A   RR    S  RR
Sbjct: 95  PEISIPRSGENKSSRSPSWAREARRSRSRSRDRR 128


>AC024770-7|AAP13756.1|  411|Caenorhabditis elegans Checkpoint
           kinase protein 1, isoformb protein.
          Length = 411

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 314 HR*PEVRLPRSRPTQSARTGQIASTVRRPADGSAKRR 204
           H   +V  P  RP + AR      T  + A+ SAKRR
Sbjct: 196 HNFGQVETPNGRPLKRARNNDENITCTQQAECSAKRR 232


>AC024770-6|AAF59485.2|  503|Caenorhabditis elegans Checkpoint
           kinase protein 1, isoforma protein.
          Length = 503

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 314 HR*PEVRLPRSRPTQSARTGQIASTVRRPADGSAKRR 204
           H   +V  P  RP + AR      T  + A+ SAKRR
Sbjct: 288 HNFGQVETPNGRPLKRARNNDENITCTQQAECSAKRR 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,446,785
Number of Sequences: 27780
Number of extensions: 171224
Number of successful extensions: 693
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)