Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H05f
         (462 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   4.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.5  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 397 RKIVVCVVAGKICCGK 350
           +K+  C + GK+ C K
Sbjct: 3   KKLFTCQLCGKVLCSK 18


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 296 RLPRSRPTQSARTGQIASTVRRPADGS 216
           R P  R  Q  +  Q+   ++RP+DG+
Sbjct: 287 RTPTYRMQQVEQPVQVYIQLKRPSDGA 313


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 296 RLPRSRPTQSARTGQIASTVRRPADGS 216
           R P  R  Q  +  Q+   ++RP+DG+
Sbjct: 287 RTPTYRMQQVEQPVQVYIQLKRPSDGA 313


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 110  TSQSPTRRRALAQVQPERGGS 172
            +SQSP  ++   Q QP R  +
Sbjct: 1284 SSQSPGNQQQTIQTQPSRNNT 1304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,750
Number of Sequences: 438
Number of extensions: 1986
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)