Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H04f
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    28   0.79 
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    27   1.0  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   1.8  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   2.4  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    26   3.2  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    24   9.7  

>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 27.9 bits (59), Expect = 0.79
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 294 NLIYFMTTQCIQVLLVWPYIIIQAL 368
           NLI F+T +C ++++V P+ ++Q L
Sbjct: 85  NLIEFLTARCPRLVVVLPWTVLQEL 109


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 257 KAVKLQTLLSKIESDIFYDHTVYTGSAGMALYYYTSSLKMNDPSKELQAALKYIHLEEL 433
           +++ L  LLS  E D FY   +      +  Y+ T S    D S+ + + L Y  L+ L
Sbjct: 247 RSIVLDALLSADEEDSFYGDALVLFEELVIRYFGTDSNPSIDASEFILSCLPYTSLDAL 305


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 429  SSKCMYFKAACNSLLGSFIFKELV**YKAIPAEPVYTV 316
            SS  + F  +CNSL       E V  Y  +P EP  T+
Sbjct: 1161 SSSVLLFVRSCNSLQAEMNSYERVLEYSKLPQEPAPTI 1198


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
 Frame = +2

Query: 23  FVPNYSYRSTDCIAFY**FGLRNYYPKIIKLK*STPEMAPRGAFDNQ-YDDYSPDSA--- 190
           F+ N  Y       F     L  +YP+ ++ K  +        F N     +S ++A   
Sbjct: 340 FLKNCGYYELAWSIFQANMELCYFYPRYLEKKLDSTFFESFSKFWNSDTPKFSEENARGW 399

Query: 191 ANVLDESGEQISQKFKLKLEKFKAVKL 271
            NVLD+   Q +Q F  ++  F+ VKL
Sbjct: 400 CNVLDDESSQQNQNFSSEIGIFQTVKL 426


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 380 DPSKELQAALKYIHLEELKGKRI 448
           DPS  L+ ALK+I + +LK  RI
Sbjct: 294 DPSYRLERALKHIEVLKLKNYRI 316


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 155 DNQYDDYSPDSAANVLDES--GEQISQKFKLKLEKFKAVK 268
           DN  D+ + D+ +NV DES  GE  S    + L    +VK
Sbjct: 363 DNNTDEANEDAQSNVSDESPKGEGSSHSDNVVLSDGNSVK 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,750,345
Number of Sequences: 5004
Number of extensions: 33782
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)