Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301H04f
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0784 - 19610370-19611548,19611830-19611919,19612001-196120... 28 4.2
09_01_0020 + 413723-413738,413867-413934,414849-415144,415275-41... 27 5.5
02_01_0218 + 1433310-1435620,1435672-1435951,1436461-1436524,143... 27 5.5
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709... 27 7.3
12_01_0312 + 2349696-2350424 27 7.3
04_03_0620 - 18088287-18088495,18089174-18089210,18089315-180893... 27 7.3
04_03_0055 + 10299539-10299703,10300042-10300746,10301025-103011... 27 7.3
03_06_0465 - 34130083-34130340,34130421-34130541,34131158-341311... 27 7.3
10_08_0514 + 18465474-18465760,18465888-18465978,18466670-184667... 27 9.6
10_08_0406 - 17688069-17690643,17691065-17691132 27 9.6
01_06_0308 - 28369843-28370925,28372249-28372944 27 9.6
>04_03_0784 -
19610370-19611548,19611830-19611919,19612001-19612076,
19612917-19613134,19613333-19613548,19613974-19614159,
19614242-19614364,19614456-19614571,19615126-19615588
Length = 888
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 80 GLRNYYPKIIKLK*STPEMAPRGAFDNQY--DDYSPDSAANVLDESGEQI 223
GLR Y KL+ + + QY D + PD A +++DE+G ++
Sbjct: 411 GLRERYELHHKLRYTDDSLIAAAQLSYQYISDRFLPDKAIDLIDEAGSRV 460
>09_01_0020 +
413723-413738,413867-413934,414849-415144,415275-415400,
415484-415566,416514-416628,416755-416847,416963-417021,
417609-417684,417812-417901,418050-418202,418294-418480,
418752-418839,419077-419125,419233-419329
Length = 531
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 140 PRGAFDNQYDDYSPDSAANVLDESGEQISQKFKLKLEKFKAVKLQTLLSKIESDI 304
P G+ DN YD + P A+V ++ E + + + K K++ +LS D+
Sbjct: 200 PTGSKDNDYDYWLPFLDASVKRKASETDGENVYTEKGELKTPKIENVLSDQSVDM 254
>02_01_0218 +
1433310-1435620,1435672-1435951,1436461-1436524,
1436557-1436562
Length = 886
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 434 LILPNVCILKQP--AILYWGHSFSKSLYNNIRPYQQNLYTLCGHKIYQILFLII 279
+ + +C ++P A+++W + K L +I Y+Q + LC K Y + +I
Sbjct: 671 VFISGLCEAQKPEQAMVFWREAREKGLVPSISCYEQLVLLLCSVKDYDNVVKVI 724
>12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,
7097150-7097367,7097502-7097717,7097922-7098107,
7098181-7098303,7098399-7098514,7099254-7099832,
7101485-7101517,7102485-7103679,7103732-7103797,
7104843-7104905,7105328-7105411
Length = 1407
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 80 GLRNYYPKIIKLK*STPEMAPRGAFDNQY--DDYSPDSAANVLDESGEQI 223
GLR Y KL+ + + QY D + PD A +++DE+G ++
Sbjct: 930 GLRERYEIHHKLRYTDDALISAAKLSYQYISDRFLPDKAIDLIDEAGSRV 979
>12_01_0312 + 2349696-2350424
Length = 242
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 137 APRGAFDNQYDDYSPDSAANVL 202
AP + D++ DD+SPD A +L
Sbjct: 5 APPTSIDDEDDDFSPDDVAQIL 26
>04_03_0620 -
18088287-18088495,18089174-18089210,18089315-18089395,
18089771-18089838,18093361-18094219
Length = 417
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 348 KAIPAEPVYTVWS*NISDSIFDNKVCNFTAL-NFSNFSLNFCEICSPD 208
K +P V+ + N SDSI++ +C++ L + S+F + + SP+
Sbjct: 169 KGLPYYQVFFDQAFNTSDSIYNATLCSYAVLMDSSDFKFSTSYLTSPE 216
>04_03_0055 +
10299539-10299703,10300042-10300746,10301025-10301116,
10302896-10303313
Length = 459
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 455 ENXFFSLLILPNVCILKQPAILYWGHSFSKSLYNNI 348
EN F L+I N +LKQP +W F L+ I
Sbjct: 139 ENVFLPLIISWNSPLLKQPIEYHWWLGFKPCLHVQI 174
>03_06_0465 -
34130083-34130340,34130421-34130541,34131158-34131186,
34132259-34132382,34132594-34132816,34132948-34132980,
34133106-34133208
Length = 296
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 446 FFSLLILPNVCILKQPAILYWGHSFSKSLY 357
FF+L L + C+L A++YW F KS Y
Sbjct: 139 FFALSELES-CVLDVLAVVYWPFYFKKSAY 167
>10_08_0514 +
18465474-18465760,18465888-18465978,18466670-18466767,
18466852-18466949,18468192-18468321,18468410-18468597,
18470291-18470323,18470627-18471000,18471116-18471294,
18471421-18471532,18471655-18471771,18471875-18472189,
18472405-18472743
Length = 786
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +2
Query: 152 FDNQYDDY---SPDSAANVLDESGEQISQKFKLKLEKFKAVKLQTLLSKIESDIFYDHTV 322
F N D+ +PD +L +S++ + K ++ ++ + D+T+
Sbjct: 393 FPNDLPDFVAEAPDGGRGLLSLPYSSLSERLLRAALRIKDKVMEETWTRARRQVT-DYTL 451
Query: 323 YTGSAGMALYYYTS 364
YTG+ G AL + S
Sbjct: 452 YTGALGTALLLFKS 465
>10_08_0406 - 17688069-17690643,17691065-17691132
Length = 880
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 155 DNQYDDYSPDSAANVLDESGEQISQKFKLKLEKFKAVKLQTLLSK 289
DN++DD+ P +A DE+ + Q+ K K +K K+ ++LS+
Sbjct: 684 DNEHDDHPPPAA----DENDDDQQQQKKKKEKKEDDRKIASVLSR 724
>01_06_0308 - 28369843-28370925,28372249-28372944
Length = 592
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 80 GLRNYYPKIIKLK*STPEMAPRGAFDNQYDD 172
G+R YP K + ++ PRG FD+++ D
Sbjct: 505 GVRGKYPSWDKFGAAKRQLDPRGLFDSRWSD 535
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,964,485
Number of Sequences: 37544
Number of extensions: 171115
Number of successful extensions: 367
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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