Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301H04f
(459 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53812| Best HMM Match : LANC_like (HMM E-Value=4.9e-17) 42 2e-04
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0) 29 1.4
SB_19255| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_14830| Best HMM Match : NADH5_C (HMM E-Value=1.1) 28 4.3
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0) 27 5.6
SB_32172| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 27 7.5
SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 27 9.9
SB_29193| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_53812| Best HMM Match : LANC_like (HMM E-Value=4.9e-17)
Length = 283
Score = 41.9 bits (94), Expect = 2e-04
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Frame = +2
Query: 143 RGAFDNQYDDYSPDSAANVLDESGEQISQKFKLKLEKFKAVKLQTLLSKIESDIFY-DHT 319
R F+N++ DY D +L E G+ I + F L + L+ ++S+ +H+
Sbjct: 5 RREFENKFSDY--DGRTRLLSEKGK-IEEPFLSNLTEQALKMLRRYEEGLKSERDESNHS 61
Query: 320 VYTGSAGMALYY--YTSSLKMNDPSKE---LQAALKYIH--LEELKGKRIXFL 457
VYTGS G AL Y S+L +D K L +AL+ + + L G+R+ FL
Sbjct: 62 VYTGSGGAALLYLHLASTLFRDDKEKRECYLSSALQILEQAAKNLTGRRVTFL 114
>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
Length = 1595
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 333 EPVYTVWS*NIS-DSIFDNKVCNFTALNFSNFSLNFCEICSPDSSRTL 193
EP Y NIS D I++ K C AL S S F +C P S RT+
Sbjct: 1437 EPNYDNTDSNISVDIIYETK-CQSDALRLSKSSRIFGFVCDPISERTI 1483
>SB_19255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 28.3 bits (60), Expect = 3.2
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +2
Query: 242 KLEKFKAVKLQTLLSKIESDIFYDHTVYTGSAGMALYYYT-----SSLKMNDPSKELQAA 406
++ + KA+ Q + KI S IF Y G+ G+AL T +S K N + +
Sbjct: 209 QIREDKALDNQDKILKILSAIFTAGAAYCGNVGLALAAKTVGDAVTSTKDNKEALDQAKT 268
Query: 407 LKYIHLEELKGKR 445
K HL++L+ +R
Sbjct: 269 EKMRHLDDLQKQR 281
>SB_14830| Best HMM Match : NADH5_C (HMM E-Value=1.1)
Length = 175
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 296 ILFLIIKFVTLQP*TFLILV*IFAKSVHQIRPEH*RHYLENNHHIDYQ 153
+LF+II +T+ T +I+ F H H H+ +HH+ YQ
Sbjct: 75 LLFIIIIIITITVITAIIIYYHF----HHYHYNHHHHHFHLHHHLHYQ 118
>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1230
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 380 HSFSKSLYNNI-RPYQQNLYTLCGHKIYQILF 288
H+ ++LY+NI R N+Y H IY+ L+
Sbjct: 17 HNIYRALYHNIYRALYSNIYRALYHNIYRALY 48
>SB_32172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 200 LDESGEQI--SQKFKLKLEKFKAVKLQTLLSKIESDIFYDHTVYTGSAGMALY 352
LD G++I S K + + K L+T++ ++++D+F + Y G+ A Y
Sbjct: 92 LDLGGQKIRVSSTRKCENDDRKRNDLKTIMLRVDADLFSNENGYLGTGSSASY 144
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 218 QISQKFKLKLEKFKAVKLQTLLSKIESDIFYDHTVYTGSAGMALYYYTSSL 370
++S+K ++KL + + L ++ I D VYT ++ A TSSL
Sbjct: 267 ELSEKIEIKLVCGLTTRQKWLYQAVKQKISIDDLVYTSASSSATSATTSSL 317
>SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 128 PEMAPRGAFDNQYDDYSPDSAANVLD 205
P ++ +G+F+N+ YSP A+++D
Sbjct: 324 PSLSDQGSFNNKTHVYSPADVADIID 349
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 92 YYPKIIKLK*STPEMAPRGAFDNQYDDYSPDSAANVLDESGEQ 220
++P+ L+ S ++A +DN+ D Y P A L+ESG++
Sbjct: 571 FHPRDQPLEESGSDLADED-WDNKADAYWPKEVAERLEESGDE 612
>SB_29193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 373
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 119 ILIL*FLDNNYGDRTINRRQYNRY 48
+ ++ +LD+ YG+ T NRR Y Y
Sbjct: 295 VTVVDYLDSAYGEPTFNRRVYLMY 318
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,260,218
Number of Sequences: 59808
Number of extensions: 224192
Number of successful extensions: 584
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -