Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H04f
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    34   0.057
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical...    34   0.057
Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p...    29   2.1  
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z83731-3|CAB06020.2|  248|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z78412-8|CAB01653.1|  400|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
           translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 33.9 bits (74), Expect = 0.057
 Identities = 20/45 (44%), Positives = 25/45 (55%)
 Frame = +2

Query: 311 DHTVYTGSAGMALYYYTSSLKMNDPSKELQAALKYIHLEELKGKR 445
           D  V TGS G A+      L M  P KEL+   +YIH +E+KG R
Sbjct: 740 DVIVLTGSDG-AITTQVRELLMPKPLKELRVKNEYIHYKEVKGAR 783


>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.2 protein.
          Length = 1173

 Score = 33.9 bits (74), Expect = 0.057
 Identities = 20/45 (44%), Positives = 25/45 (55%)
 Frame = +2

Query: 311 DHTVYTGSAGMALYYYTSSLKMNDPSKELQAALKYIHLEELKGKR 445
           D  V TGS G A+      L M  P KEL+   +YIH +E+KG R
Sbjct: 860 DVIVLTGSDG-AITTQVRELLMPKPLKELRVKNEYIHYKEVKGAR 903


>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 230 FAKSVHQIRPEH*RHYLENNHHIDYQKLPSVPFQVYFI 117
           + KS H   P   R Y +++  ++Y + PS PF V F+
Sbjct: 767 YRKSEH---PSRFRQYSDDHRKVNYDRSPSTPFFVRFV 801


>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 230 FAKSVHQIRPEH*RHYLENNHHIDYQKLPSVPFQVYFI 117
           + KS H   P   R Y +++  ++Y + PS PF V F+
Sbjct: 767 YRKSEH---PSRFRQYSDDHRKVNYDRSPSTPFFVRFV 801


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 300 SDSIFDNKVCNFTALNFSNFSLNFCEICSPDS 205
           S  +FD K CNF  LN +  + +F E CS  S
Sbjct: 567 SSPMFDYKKCNFPLLNRARVNWDF-EFCSQKS 597


>Z83731-3|CAB06020.2|  248|Caenorhabditis elegans Hypothetical
           protein M04C9.2 protein.
          Length = 248

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +2

Query: 149 AFDNQYDDYSPDSAANVLDESGEQISQKFKLKLEKFKAVKLQTLLSKI 292
           AFD Q++D   + ++ V+DE  ++  +  +  + KF  V  +T+  K+
Sbjct: 51  AFDGQFEDLDYNPSSVVIDELLKEEIENVRFTVHKF-PVSYETVAEKV 97


>Z78412-8|CAB01653.1|  400|Caenorhabditis elegans Hypothetical
           protein M176.8 protein.
          Length = 400

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 458 RENXFFSLLILPNVCILKQPAILYWGHSFSKSLYNNIR 345
           R+N +    +    C LKQP++L     FS  ++NN++
Sbjct: 243 RKNFYVDWTMKHYTCKLKQPSMLNMVIPFSARIWNNVQ 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,473,658
Number of Sequences: 27780
Number of extensions: 180119
Number of successful extensions: 528
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)