Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H04f
         (459 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ...    29   2.0  
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ...    28   3.5  
At5g16730.1 68418.m01959 expressed protein weak similarity to mi...    27   4.6  
At4g20450.1 68417.m02984 leucine-rich repeat protein kinase, put...    27   6.1  

>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
           subunit (ClpC) identical to AtClpC GI:5360574 from
           [Arabidopsis thaliana]; contains Pfam profiles  PF02861:
            Clp amino terminal domain and PF02151:  UvrB/uvrC motif
          Length = 952

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 80  GLRNYYPKIIKLK*STPEMAPRGAFDNQY--DDYSPDSAANVLDESGEQI 223
           GLR  Y    KL+ +   +       +QY  D + PD A +++DE+G ++
Sbjct: 468 GLRERYEIHHKLRYTDEALVAAAQLSHQYISDRFLPDKAIDLIDEAGSRV 517


>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
           subunit / ClpC almost identical to ClpC GI:2921158 from
           [Arabidopsis thaliana]; contains Pfam profile PF02861:
           Clp amino terminal domain; contains Pfam profile
           PF00004: ATPase, AAA family; contains Pfam profile
           PF02151: UvrB/uvrC motif
          Length = 929

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 80  GLRNYYPKIIKLK*STPEMAPRGAFDNQY--DDYSPDSAANVLDESGEQI 223
           GLR  Y    KL+ +   +        QY  D + PD A +++DE+G ++
Sbjct: 447 GLRERYEIHHKLRYTDESLVAAAQLSYQYISDRFLPDKAIDLIDEAGSRV 496


>At5g16730.1 68418.m01959 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 [Drosophila
           melanogaster] GI:2773363, SMC2-like condensin
           [Arabidopsis thaliana] GI:14279543
          Length = 853

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +2

Query: 155 DNQYDDYSPDSAANVLDESGEQISQKFKLKLEKFKAVKLQTLLSKI 292
           D+   D S  ++   +DE+G  ++ + +L +EK K  K +TLL K+
Sbjct: 796 DSSKIDESDKTSTENIDETGNALTAEDQLTMEK-KIKKKKTLLGKV 840


>At4g20450.1 68417.m02984 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 898

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 339 PAEPVYTVWS*NISDSIFDNKVCNFTALNFSNFSLN 232
           P  P+  +W+     ++F +     T+++FSNF LN
Sbjct: 408 PCVPIQFIWTGLNCSNMFPSIPPRITSIDFSNFGLN 443


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,559,938
Number of Sequences: 28952
Number of extensions: 155042
Number of successful extensions: 347
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)