Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H03f
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    30   0.15 
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    28   0.80 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   1.1  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   1.4  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    26   2.4  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   3.2  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    26   3.2  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    25   4.3  
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||...    25   5.6  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    25   5.6  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    25   7.4  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    25   7.4  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    25   7.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   9.8  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    24   9.8  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    24   9.8  

>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 30.3 bits (65), Expect = 0.15
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +1

Query: 229 RSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPAS 384
           +  CC+S   S  C+     C S    TSCCS     CC +    CCSN  S
Sbjct: 244 KKSCCSSKKPS-CCSQEKKGCCSTE-KTSCCSQEKKSCCTSEKPSCCSNGKS 293



 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = +1

Query: 313 SCCSSSGILCCFAILCWCCSNPASGSLHS-PCSCC 414
           SCCS     CC +    CCS    G   +   SCC
Sbjct: 238 SCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCC 272



 Score = 27.1 bits (57), Expect = 1.4
 Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
 Frame = +1

Query: 232 SPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCS-NPASGSLHSPCS 408
           S CC+    S S    C  C   +   SCCSS    CC      CCS    S       S
Sbjct: 223 SSCCSKKDSSPSEKPSC--CSQEK--KSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKS 278

Query: 409 CCIRCRLPIWSSTSST 456
           CC   +    S+  ST
Sbjct: 279 CCTSEKPSCCSNGKST 294


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
 Frame = +1

Query: 217 LRSCRSPCCNSICCSYSCTLRCTFCYSN----RCGTSCCSSSGILCCFAILCWCCSNPAS 384
           L  C +P C  +   YS      F ++       GTSC +   + C    +   C+NP  
Sbjct: 269 LGKCNNPNCRYVHIHYSENAPICFEFAKYGFCELGTSCKNQHILQCTDYAMFGSCNNPQC 328

Query: 385 GSLHSPCSCCI--RCRLPIWSSTSSTXP 462
              H   S  +  +   PI  +  S  P
Sbjct: 329 SLYHGAVSADVPEQTEAPISKTAGSINP 356


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 25/87 (28%), Positives = 37/87 (42%)
 Frame = +1

Query: 196 SFDSSTGLRSCRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSN 375
           S  S+T   S  SP  +S   + S +   +   S+   +S  SSS      +      S+
Sbjct: 131 SVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 190

Query: 376 PASGSLHSPCSCCIRCRLPIWSSTSST 456
            +S S  S  S      +PI SSTSS+
Sbjct: 191 SSSSSSSSSSSSSSSSSVPITSSTSSS 217


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
 Frame = -3

Query: 190  CPAG--DINLCSVWRNVLRYSLSVSHVGWSNQRSS-----GYCWNSC 71
            C AG  D++ C+ W     Y        + NQ +S      YCWN C
Sbjct: 1237 CSAGVTDMSECNTWSYQKSYDYITGCNNYDNQGNSQTDASDYCWNVC 1283


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = +1

Query: 229 RSPCCNSICCSYSCTLRCTFCY---SNRCGTS 315
           RS  C     S +C  +CTFC+   +N  GTS
Sbjct: 344 RSHLCMEATPSLACANKCTFCWRHGTNPVGTS 375


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
 Frame = +1

Query: 241  CNSICCSYSCTLRCTFCYS---NRCGTSCCSSSGILCCFAILC 360
            CNS   + S T  C  CYS       T CC S   LC    LC
Sbjct: 1240 CNSCNSTTSNTRICEKCYSLVPRMSCTFCCLSIHGLCIVCGLC 1282


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 355 LCWCCSNPASGSLHSPCSCCIRCRLPI 435
           LC C S P+ G  H P      C LPI
Sbjct: 297 LCACHSIPSRGGFHCPRCKAKVCTLPI 323


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +1

Query: 295 SNRCGTSCCSSSGIL 339
           SNR GTS  SSSGIL
Sbjct: 359 SNRSGTSSISSSGIL 373


>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 225

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 380 AGLEQHQHSMAKQHRMPLLEQQEV 309
           AGL +  H++ +Q++  L +QQ+V
Sbjct: 118 AGLSEEDHAVNRQYQEQLYQQQDV 141


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 268 SYRSSKWSCNRGYGRSEGRCCYQRTQCPAGDINLCSVWRN 149
           +YRS +W+        E  CC     C + +I +C V RN
Sbjct: 52  TYRS-RWAYVNDPQIGEINCCLNGWLCESNNILVCDVCRN 90


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 223 SCRSPCCNSICC 258
           +CR+PCC+ + C
Sbjct: 292 ACRTPCCDKLFC 303


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/55 (20%), Positives = 22/55 (40%)
 Frame = +1

Query: 184 QGIESFDSSTGLRSCRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCF 348
           + +E+     G    R P   +     + +     C  +R G  CC+++  + CF
Sbjct: 415 KNLETASHDAGDLFWRMPFHEAYLKQLTSSSNADLCNVSRAGGGCCTAAAFIKCF 469


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 455 VLEVLDHMGSRQRMQQEQGECREPLAGLEQHQHS 354
           +LEVL +     R   E G+   P  G +QH HS
Sbjct: 155 LLEVLLNRYVEWRFGMEIGDHHGPTLGAKQHSHS 188


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +1

Query: 223 SC-RSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWC 366
           SC R  C NSI        RC +C SN+  TS             LCWC
Sbjct: 223 SCIRKWCKNSIEQRNEDAWRCPYCQSNQTETS----------LHYLCWC 261


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 343 CFAILCWCC 369
           CFA+LC CC
Sbjct: 35  CFALLCLCC 43


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -2

Query: 443 LDHMGSRQRMQQEQGECREPLAGLEQHQHSMAKQHRMPLLEQQEVP 306
           L HM  +Q+ QQ+Q + ++     +Q Q    +Q +    +Q++ P
Sbjct: 253 LQHMQQQQQQQQQQQQQQQ-----QQQQQQQQQQQQQQQQQQKQAP 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,270,526
Number of Sequences: 5004
Number of extensions: 24133
Number of successful extensions: 110
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)