Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H01f
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    25   3.2  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    25   4.2  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    24   7.3  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    24   7.3  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    23   9.6  
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc...    23   9.6  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    23   9.6  

>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 150 SFSAICVLSASFLTFSMA*RFRCSIFQ 230
           SF +IC L  SFL F  + RF+  +++
Sbjct: 91  SFLSICFLFISFLNFIFSTRFQNKLYR 117


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 34  AGLSTII*ATLIVTKLKDI*NCWCSRRDHQFHAKYSQR 147
           +G++ +  A  +++    I   W SR DH+F   YS+R
Sbjct: 370 SGIAKVNRAVCMLSNTTSIAEAW-SRLDHKFDLMYSKR 406


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +3

Query: 54  LSNIDCYEIERYLKLLVFSSGPSISC*V-----FPTFSFSAICVLSA 179
           LS++  +E E  +K ++   G  +   +     +PTFS  AIC + A
Sbjct: 828 LSDLHEFETESEIKAVILRDGIEMEITIPLYPEYPTFSSRAICWMGA 874


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -2

Query: 325 KKYXKTTF*EINK*YVSY*TQFFFRSNLKLNFWKIEHLNLYA---IENVKKLAL 173
           KKY KT   ++   +V Y +++ F        W++   ++YA     + KKLAL
Sbjct: 203 KKYDKTLHTDLQGFWVDYMSRYTFTDFSITTNWQLHVEDIYARLFTNHNKKLAL 256


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 45  YYHLSNIDCYEIERYLKLLVFSSGPSIS 128
           Y   S I C+    YL + +FS GPS S
Sbjct: 469 YKVFSCITCHNSPVYLVIELFSIGPSAS 496


>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
           Sen34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 175 LSTQIAEKENVGNT*HEIDGPDENTNSFRYL 83
           ++T+IAEK ++ +  H+ +   EN +  RYL
Sbjct: 151 VTTRIAEKSSMNDDFHKEEDVFENLDINRYL 181


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 24   NNISWFVYYHLSNIDCYEIERYLKLLVFSS 113
            N+  WF+Y+  +      +E    L+VFSS
Sbjct: 1114 NHRIWFLYFSSNRWQAIRVEAIGALVVFSS 1143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,274,018
Number of Sequences: 5004
Number of extensions: 23463
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)