Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H01f
         (338 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14785| Best HMM Match : Nuc_sug_transp (HMM E-Value=5.1e-15)        27   3.9  
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)                26   9.0  
SB_58853| Best HMM Match : SNF (HMM E-Value=0)                         26   9.0  
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)              26   9.0  

>SB_14785| Best HMM Match : Nuc_sug_transp (HMM E-Value=5.1e-15)
          Length = 261

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +3

Query: 144 TFSFSAICVLSASFLTFSMA*RFRCSIFQKFSFRL 248
           T SF  I V +A  LT ++  +FR ++FQ  SF+L
Sbjct: 165 TQSFLLIIVTAAYGLTVALILKFRDNMFQVMSFQL 199


>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
          Length = 839

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 147 TLGILSMKLMVPTRTPTVSDIFQFRNNQCCSNDSR 43
           TL  LS   + P+ TPT +D+     N+C    S+
Sbjct: 692 TLVQLSTTSVGPSPTPTTTDVGAIEGNECLLGSSK 726


>SB_58853| Best HMM Match : SNF (HMM E-Value=0)
          Length = 905

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 83  KISETVGVLVGTINFMLSIPNVFLFSYLC 169
           K    V  ++ TI F + + NV+ F YLC
Sbjct: 102 KWGNKVEFMLATIGFAVGLGNVWRFPYLC 130


>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
          Length = 3094

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 147 TLGILSMKLMVPTRTPTVSDIFQFRNNQCCSNDSR 43
           TL  LS   + P+ TPT +D+     N+C    S+
Sbjct: 641 TLVQLSTTSVGPSPTPTTTDVGAIEGNECLLGSSK 675



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 147  TLGILSMKLMVPTRTPTVSDIFQFRNNQCCSNDSR 43
            TL  LS   + P+ TPT +D+     N+C    S+
Sbjct: 2947 TLVQLSTTSVGPSPTPTTTDVGAIEGNECLLGSSK 2981


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,519,513
Number of Sequences: 59808
Number of extensions: 140071
Number of successful extensions: 262
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)