Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H01f
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   3.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   7.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   7.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   7.1  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    20   9.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 211 NLYAIENVKKLALSTQIAEKENVGNT 134
           N Y +   KK  L  +I E+EN   T
Sbjct: 425 NFYEVARNKKKDLLKEILERENDSGT 450


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +3

Query: 24  NNISWFVYYHLSNI 65
           N + W +Y H+S++
Sbjct: 420 NLMYWIIYLHISDV 433


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +3

Query: 24  NNISWFVYYHLSNI 65
           N + W +Y H+S++
Sbjct: 420 NLMYWIIYLHISDV 433


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 12  SNNPNNISWFVYYHLSNID 68
           +NN NN    +YY++ NI+
Sbjct: 344 NNNYNNNCKKLYYNIINIE 362


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 12  SNNPNNISWFVYYHLSNID 68
           +NN NN +  +YY+++ I+
Sbjct: 98  NNNYNNYNKKLYYNINYIE 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,583
Number of Sequences: 438
Number of extensions: 1543
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)