Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G12f
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4S4B0 Cluster: Chromosome undetermined SCAF14739, whol...    36   0.41 
UniRef50_A2X3D9 Cluster: Putative uncharacterized protein; n=3; ...    36   0.55 
UniRef50_Q02979 Cluster: Glycerophosphodiester phosphodiesterase...    35   0.96 
UniRef50_Q6C919 Cluster: Similarity; n=1; Yarrowia lipolytica|Re...    34   1.7  
UniRef50_Q14VU5 Cluster: ORF13; n=1; Ranid herpesvirus 1|Rep: OR...    33   3.9  
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    33   3.9  
UniRef50_A7AM79 Cluster: DNA-directed RNA polymerase, beta subun...    33   5.1  
UniRef50_Q5K9K6 Cluster: Serine/threonine-protein kinase, putati...    32   6.8  
UniRef50_Q6HR70 Cluster: Conserved domain protein; n=15; Bacillu...    32   8.9  

>UniRef50_Q4S4B0 Cluster: Chromosome undetermined SCAF14739, whole
           genome shotgun sequence; n=3; Clupeocephala|Rep:
           Chromosome undetermined SCAF14739, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 741

 Score = 36.3 bits (80), Expect = 0.41
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -3

Query: 391 GAEKPGGINSRAAYEKGKDIDEGHRTGSAALGGCRGVQRSSRL 263
           G +KPG +    A EK +D+ E  + G A+    R +QRSS L
Sbjct: 690 GGQKPGAVFRDGASEKAEDVTEAQQAGHASAQALRRLQRSSLL 732


>UniRef50_A2X3D9 Cluster: Putative uncharacterized protein; n=3;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 437

 Score = 35.9 bits (79), Expect = 0.55
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 240 VIGHWQTSNRLERCTPRHPPRAAEPVLCPSSISLPFSYA-ALELIP 374
           V+GH+ T NR   C  RH P A++P   PSS S P  +  +L+ +P
Sbjct: 86  VLGHYYTLNRPANC--RHHPPASDPPFVPSSSSPPTGHCFSLDYLP 129


>UniRef50_Q02979 Cluster: Glycerophosphodiester phosphodiesterase
           GDE1; n=2; Saccharomyces cerevisiae|Rep:
           Glycerophosphodiester phosphodiesterase GDE1 -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 1223

 Score = 35.1 bits (77), Expect = 0.96
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = -3

Query: 484 WTTQEHR----HRHIVEMFSIFKDFLSHV*SKTSHGAEKPGGINSRAAYEKGKDIDEGHR 317
           WT  EH     H HI +M  I  + ++H  S+ + G+E+   +N  +A E  +  + G+ 
Sbjct: 607 WTPMEHAVLRGHLHIADMVQIRDELVTHPHSQLNSGSEEKEPLNEISAGELNERNENGNG 666

Query: 316 TGSAALGGCRGVQRS 272
               +LG   G  +S
Sbjct: 667 GNKGSLGKLAGPIKS 681


>UniRef50_Q6C919 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
           Similarity - Yarrowia lipolytica (Candida lipolytica)
          Length = 767

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = -3

Query: 355 AYEKGKDIDEGHRTGSAALGGCRGVQRSSRLL 260
           AY   KD ++GHR GS  +G  RG +RSS L+
Sbjct: 264 AYVSRKDREQGHRNGSRDVGTFRGQKRSSALV 295


>UniRef50_Q14VU5 Cluster: ORF13; n=1; Ranid herpesvirus 1|Rep: ORF13 -
            Ranid herpesvirus 1 (Lucke tumor herpesvirus)
          Length = 3149

 Score = 33.1 bits (72), Expect = 3.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 379  PGGINSRAAYEKGKDIDEGHRTGSAALGGCRGVQRSS 269
            PG + SR+    G    E +R+ ++ LGG RG  RSS
Sbjct: 1025 PGAVRSRSVSSSGSSRAESNRSSASPLGGGRGRSRSS 1061


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 33.1 bits (72), Expect = 3.9
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +1

Query: 280  VHPGIHPEPRNPSCVLHRYLYLSHT-RLWN*--SLQASQRHEMSYFKRGL 420
            VHP  + EP   S V  +  +L  T RLWN   S    +R++MS+FKRGL
Sbjct: 915  VHP-YYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 963


>UniRef50_A7AM79 Cluster: DNA-directed RNA polymerase, beta subunit,
           putative; n=1; Babesia bovis|Rep: DNA-directed RNA
           polymerase, beta subunit, putative - Babesia bovis
          Length = 1171

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 403 KTSHGAEKPGGINSRAAYEKGKDIDEGHRTGSAALGGCRGVQRSSRLL 260
           K +H AE+PGG+N+R        +D+   TG + +G  + V++   LL
Sbjct: 832 KLNHAAERPGGLNNRPQITNVTPVDD--LTGDSVIGVGQKVKKDDTLL 877


>UniRef50_Q5K9K6 Cluster: Serine/threonine-protein kinase, putative;
           n=1; Filobasidiella neoformans|Rep:
           Serine/threonine-protein kinase, putative - Cryptococcus
           neoformans (Filobasidiella neoformans)
          Length = 1022

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 16/28 (57%), Positives = 16/28 (57%)
 Frame = +3

Query: 273 ERCTPRHPPRAAEPVLCPSSISLPFSYA 356
           ER  PR PPRA  P   P S  LPFS A
Sbjct: 702 ERSAPRPPPRATRPAPPPISRPLPFSPA 729


>UniRef50_Q6HR70 Cluster: Conserved domain protein; n=15; Bacillus
           cereus group|Rep: Conserved domain protein - Bacillus
           anthracis
          Length = 659

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 238 INNRVKRLVDFTKSSSF*HAFHTTDQSHNY*NNEYFV*IRKY 113
           ++N ++ +V F       H  HT +Q H+Y  NE ++ I  Y
Sbjct: 539 LSNSIRSIVTFNHDEKKLHVTHTNEQIHSYFKNELYMGITLY 580


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 541,779,238
Number of Sequences: 1657284
Number of extensions: 11037434
Number of successful extensions: 26071
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 25347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26049
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)