Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G12f
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    27   2.2  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    26   3.8  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    26   3.8  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    25   5.1  
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr...    25   5.1  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    25   6.7  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    25   8.9  

>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +2

Query: 311 TRPVSFIDIFTFLIRGSGINPSRLLSAMRCLTSNVA*KVLKNGEHLNNM 457
           T P+   + +  ++R +G+NP+R  S +R L   ++ K L   +   N+
Sbjct: 42  TSPLDVFNAYESVLRENGLNPARHRSYIRILYRLISSKKLSWNDEWRNL 90


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 2   FFFFFYSRTCVLKTNPSTAQDAY 70
           F FF +    +LK + +TA+D Y
Sbjct: 102 FLFFIFKSELILKRDTTTAEDVY 124


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 414 TFEVRHLMALRSLEGLIPEP 355
           T E R  M+LR L+GL P P
Sbjct: 195 TTEARQQMSLRQLQGLFPYP 214


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 151 SYGIGRLCEKHVKMNLIW 204
           S+ + R+  K +KMNL+W
Sbjct: 786 SFDLSRVIVKRIKMNLVW 803


>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 298 PEPRNPSCVLHRYLYLSH 351
           P+P  PSC+ +  LY+ H
Sbjct: 131 PDPPTPSCLKYTLLYMPH 148


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 281 YTPASTQSRGTRPVSFIDIFTFLIRGSGINPSRLLSAMRCLTSNVA*KVLKNGEHLNNM 457
           ++P  TQS   +   F+   TF+ + SGI+ + L    R + S +     K G  LNN+
Sbjct: 116 FSPIETQSIVEQLDEFLKSSTFIAQDSGISVADLAVYAR-IHSYICGLSAKEGYKLNNV 173


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 391 HEMSYFKRGLKSP*KWRTSQQYADDDVPVWSNRPVFLF 504
           H +  +  GLK P   RT  Q  D+D+ +W  R  + F
Sbjct: 127 HSVGGYMAGLKPPFSLRTVLQSRDEDL-LWRARLYYSF 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,537
Number of Sequences: 5004
Number of extensions: 47481
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)