Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G12f
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0461 + 3492302-3492413,3492868-3492964,3493053-3493131,349...    29   2.2  
09_06_0364 + 22554082-22554225,22554306-22554520,22554671-225547...    28   3.9  
09_03_0006 + 11426346-11426420,11426733-11427452                       28   3.9  
09_01_0025 - 441528-444284                                             28   5.1  
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224...    28   5.1  
07_01_0469 - 3552409-3553368                                           27   8.9  
02_04_0024 + 19004383-19004586                                         27   8.9  
01_06_0700 - 31317825-31318253                                         27   8.9  
01_01_0113 + 842543-843191,844964-844987,845202-846274                 27   8.9  

>07_01_0461 +
           3492302-3492413,3492868-3492964,3493053-3493131,
           3493484-3493794,3494219-3494231
          Length = 203

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 261 SNRLERCTPRHPPRAAEPVLCPSSISLPFSYAALELIPPGFSAP*DVLL 407
           +NRL+   PR PP    P   P+  ++P S +    + P  +AP   LL
Sbjct: 112 NNRLKHILPRPPPEPT-PTPAPAPAAVPPSASVPSTVVPPVAAPPSALL 159


>09_06_0364 +
           22554082-22554225,22554306-22554520,22554671-22554752,
           22554976-22555371,22555553-22556293,22556420-22556551,
           22556981-22557367
          Length = 698

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 373 GINSRAAYE-KGKDIDE--GHRTGSAALGGCRGVQR 275
           G   R A+E  G+  DE  GH  G  A+GG  GVQR
Sbjct: 40  GCKPRHAFEISGRVFDEIRGHMGGDMAMGGGGGVQR 75


>09_03_0006 + 11426346-11426420,11426733-11427452
          Length = 264

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 276 RCTPRHPPRAAEPVLCPSSISLPFSYAALELIPP 377
           R  PRHPP+ A  VL     S    + A+  +PP
Sbjct: 22  RLRPRHPPKPAIVVLAAPPASSSQRHCAIRPVPP 55


>09_01_0025 - 441528-444284
          Length = 918

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 276 RCTPRHPPRAAEPVLCPSSISLPFSYAALELIPPGFSAP 392
           RC+P  PP  ++P+  PSS++L   +  L  +   F+ P
Sbjct: 16  RCSPTQPPAGSDPI--PSSMNLSEEWRFLFPVSSVFAPP 52


>02_02_0453 +
           10420585-10421661,10422015-10422146,10422232-10422456,
           10422555-10422680,10422777-10422839,10423214-10423296,
           10424078-10424309,10424421-10424489,10424532-10424731,
           10424819-10424894,10425015-10425081,10425194-10425471,
           10425600-10425787,10426235-10426391,10426496-10426741
          Length = 1072

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 396 LMALRSLEGLIPEPRMRKVKISMKDTGRVPRLWVDAGVY 280
           +M L  +EGL   P ++       D G  PRLWV  G+Y
Sbjct: 266 VMTLDQIEGL-KNPDVQCWGTEESDDGDPPRLWVQNGMY 303


>07_01_0469 - 3552409-3553368
          Length = 319

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 285 PRHPPRAAEPVLCPSSISLPFSYAALELIPPGFSAP 392
           PR+PP +A P   P   + P   AA  L P   SAP
Sbjct: 205 PRNPPPSAAPAAPPVPPAAPAVPAAPALAPVPVSAP 240


>02_04_0024 + 19004383-19004586
          Length = 67

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 391 GAEKPGGINSRAAYEKGKDIDEGHRTG-SAALGGCRG 284
           G E+ GG+ + A  E+G+ I +  + G     GGC G
Sbjct: 22  GEEEEGGVAAAAKKEEGRQIQKEEKGGRRRGSGGCLG 58


>01_06_0700 - 31317825-31318253
          Length = 142

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 273 ERCTPRHPPRAAEPVLCPSSISLPFSYAALELIP 374
           ERC  RH   AA+P +CP +   P S +A   IP
Sbjct: 20  ERC--RHHHHAAQPAVCPVAPLRPSSSSAPVRIP 51


>01_01_0113 + 842543-843191,844964-844987,845202-846274
          Length = 581

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 312 PVLCPSSIS-LPFSYAALELIPPGFSAP 392
           PVL P  ++ + +SYA + +IPP  S+P
Sbjct: 79  PVLGPCKVTEISYSYATMNVIPPVDSSP 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,435,255
Number of Sequences: 37544
Number of extensions: 301894
Number of successful extensions: 755
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)