Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G12f
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7447| Best HMM Match : CHGN (HMM E-Value=0)                         29   2.3  
SB_57867| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054)               27   9.2  
SB_19205| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_7447| Best HMM Match : CHGN (HMM E-Value=0)
          Length = 918

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 100 YKRSYTFLFIQNTHYFNSYGIGRLC 174
           YK  Y FLF +N  ++ +Y  G +C
Sbjct: 612 YKEEYNFLFNKNAGFWRTYAFGIVC 636


>SB_57867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 890

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 24/81 (29%), Positives = 36/81 (44%)
 Frame = -3

Query: 433 FKDFLSHV*SKTSHGAEKPGGINSRAAYEKGKDIDEGHRTGSAALGGCRGVQRSSRLLVC 254
           + D++    S TS+G   P G ++ A   KGK  D G           +GV+   R L C
Sbjct: 630 YNDWICRTGSTTSNGTG-PTGDHTPAMEGKGKQEDWGDSV-------LKGVEWWLRALKC 681

Query: 253 QCPITINNRVKRLVDFTKSSS 191
           +    + N  +  VDFTK  +
Sbjct: 682 RYWFDLGNHEEYDVDFTKKKT 702


>SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054)
          Length = 425

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 512 YIGNKNTGLLDHTGTSSSAYC 450
           ++  K   LL HTG+ +SAYC
Sbjct: 144 WVEQKAVSLLQHTGSLNSAYC 164


>SB_19205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 376 GGINSRAAYEKGKDIDEGHRTGSAALGGCRG 284
           GG +  ++ E G D D+G+R+G +  GG  G
Sbjct: 76  GGDDGNSSGESGGDGDDGNRSGESGGGGDDG 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,906,933
Number of Sequences: 59808
Number of extensions: 344700
Number of successful extensions: 793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)