Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G12f
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AL032627-19|CAD66222.1|  309|Caenorhabditis elegans Hypothetical...    27   6.0  
AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical ...    27   6.0  

>Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical
           protein F18H3.4 protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/72 (25%), Positives = 28/72 (38%)
 Frame = -3

Query: 427 DFLSHV*SKTSHGAEKPGGINSRAAYEKGKDIDEGHRTGSAALGGCRGVQRSSRLLVCQC 248
           DF +   +      E+ GG+   +      D+D       + +G      RSS    C  
Sbjct: 374 DFYNQQTTNELDWGEELGGMEFLSVSRTASDMDSHMDDSISDVGSMSSFYRSSSRTSCPS 433

Query: 247 PITINNRVKRLV 212
           P+T +N  KR V
Sbjct: 434 PLTTDNSPKRFV 445


>AL032627-19|CAD66222.1|  309|Caenorhabditis elegans Hypothetical
           protein Y41C4A.16 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = -3

Query: 454 IVEMFSIFKDFLSHV*SKTSHGAEKPGGINSRAAYEKGKDIDEGHRTGSAALGGCRG 284
           I    S  K     + S+ +H  E P   N+R A + G D D G     A+ GG  G
Sbjct: 46  IDHQISFCKHSARDIYSEVNHIRENPKVNNTRFARQAGYDFDTGAVDSFASSGGSGG 102


>AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical
           protein F09G2.4 protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 376 GGINSRAAYEKGKDIDEGHRTGSAALGGCRGVQRSSRLL 260
           G   S A  E GK+++ GH   S    G +G  R + +L
Sbjct: 722 GSQESLAISESGKEVENGHTNDSRTKKGTKGKIRGNLIL 760


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,618,854
Number of Sequences: 27780
Number of extensions: 264120
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)