Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G11f
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    29   0.30 
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.2  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   3.7  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   3.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    24   6.5  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    24   8.6  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    24   8.6  

>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 28.7 bits (61), Expect = 0.30
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = -3

Query: 279 NGHRNRMNNRQCL-HDRNFSDDRQLLDHRNFFYDRHFLNVRVVMVQSMHFVRYVDPEM 109
           NGH N  +N+    HD         L H++ +   H L+  ++  Q  H   Y  P +
Sbjct: 197 NGHSNLRDNKSISSHDLLTKGITLSLQHQDLWSGEHLLSQNLLWRQVTHLTEYASPSV 254


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -3

Query: 273 HRNRMNNRQCLHDRNFSDDRQLLDHRNFFYDRHFLNVRVVMVQSMH 136
           HR+ ++ R CL+D + + DR+   H  +  DR  LN+   +  ++H
Sbjct: 26  HRDIISTRACLNDNSPAFDRRY--HWVWEEDRRCLNLGKTLASTIH 69


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 72  ARARAVWSRKSHTFQDPRTLRSAYSAPSPHARSESAYHKRSSCDQGAAYHQRSSGRED 245
           +R+R   SR  H + D  +    YS  S H+RS   Y +RSS    A  +     R+D
Sbjct: 158 SRSRHPSSRSRHRYDD-YSRSPPYS--SRHSRSRRRYEERSSRSSRAHDYDYEDLRDD 212


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -1

Query: 125 TWILKCVTFP*--PNGSGSGKGLARLMATVAARTKMILW 15
           T+I  C+ +P   P+GS +G   ++ +A ++  T ++LW
Sbjct: 221 TFITSCIDWPAVTPHGSLAGVTKSQCIAQMSPITYLVLW 259


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 49  AMSLANPLPEPEPFGHGKVTHFRIHVPY 132
           A SLA P+PEP P  +  +  F + +P+
Sbjct: 887 AQSLATPIPEPVPVDN--MPTFTVLIPH 912


>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 267  NRMNNRQCLHDRNFS--DDRQLLDHRNFFYDRHFLNVRVVMVQSMHFVRYV 121
            N +N RQ + +  +S  D  + L+H       HFL V V+ ++  H+++ V
Sbjct: 1076 NSINQRQLVFETLYSLLDIPESLNHLT-----HFLQVSVMGLEDEHYIKLV 1121


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 304 PVLLPIHEHLSYSHWH 351
           P+ LPIH + SYS+ H
Sbjct: 163 PISLPIHLYKSYSYNH 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,578
Number of Sequences: 5004
Number of extensions: 26368
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)