Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301G11f
(368 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6506| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.055
SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51) 29 1.6
SB_7887| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06) 28 2.7
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31) 27 3.6
SB_52683| Best HMM Match : BCNT (HMM E-Value=3) 27 4.8
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0) 27 4.8
SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_39075| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_31415| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
>SB_6506| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 33.5 bits (73), Expect = 0.055
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +1
Query: 166 VQKVPIIKEVPVIKELPIIREVPVVKTL 249
VQ + I++ +PVI+ +PI R +P+V+ +
Sbjct: 61 VQVISIVRVIPVIRNIPIFRVIPIVRVI 88
Score = 33.1 bits (72), Expect = 0.072
Identities = 9/28 (32%), Positives = 21/28 (75%)
Frame = +1
Query: 166 VQKVPIIKEVPVIKELPIIREVPVVKTL 249
V+ +P+I+ +P+ + +PI+R +PV + +
Sbjct: 67 VRVIPVIRNIPIFRVIPIVRVIPVTRVI 94
Score = 32.7 bits (71), Expect = 0.096
Identities = 9/27 (33%), Positives = 21/27 (77%)
Frame = +1
Query: 169 QKVPIIKEVPVIKELPIIREVPVVKTL 249
Q +PI++ +PVI+ +P+ R +P+++ +
Sbjct: 2 QVIPIVRVIPVIRVIPVTRVIPIIQVI 28
Score = 32.3 bits (70), Expect = 0.13
Identities = 10/28 (35%), Positives = 22/28 (78%)
Frame = +1
Query: 166 VQKVPIIKEVPVIKELPIIREVPVVKTL 249
V+ +P+I+ +PV + +PII+ +P+V+ +
Sbjct: 7 VRVIPVIRVIPVTRVIPIIQVIPIVRVI 34
Score = 31.5 bits (68), Expect = 0.22
Identities = 7/28 (25%), Positives = 21/28 (75%)
Frame = +1
Query: 166 VQKVPIIKEVPVIKELPIIREVPVVKTL 249
++ +PI + +P+++ +P+ R +P+V+ +
Sbjct: 73 IRNIPIFRVIPIVRVIPVTRVIPIVQVI 100
Score = 31.5 bits (68), Expect = 0.22
Identities = 9/28 (32%), Positives = 22/28 (78%)
Frame = +1
Query: 166 VQKVPIIKEVPVIKELPIIREVPVVKTL 249
V+ +P+I+ +P+++ + I+R +PVV+ +
Sbjct: 139 VRVIPVIRVIPIVQVISIVRVIPVVRVI 166
Score = 31.1 bits (67), Expect = 0.29
Identities = 8/28 (28%), Positives = 21/28 (75%)
Frame = +1
Query: 166 VQKVPIIKEVPVIKELPIIREVPVVKTL 249
++ +P+ + +P+I+ +PI+R +PV + +
Sbjct: 13 IRVIPVTRVIPIIQVIPIVRVIPVTRVI 40
Score = 31.1 bits (67), Expect = 0.29
Identities = 8/25 (32%), Positives = 20/25 (80%)
Frame = +1
Query: 175 VPIIKEVPVIKELPIIREVPVVKTL 249
+PII+ +P+++ +P+ R +P+V+ +
Sbjct: 22 IPIIQVIPIVRVIPVTRVIPIVQVI 46
Score = 30.7 bits (66), Expect = 0.39
Identities = 8/25 (32%), Positives = 20/25 (80%)
Frame = +1
Query: 175 VPIIKEVPVIKELPIIREVPVVKTL 249
+PI++ P+++ +P+IR +P+V+ +
Sbjct: 130 IPIVRVNPIVRVIPVIRVIPIVQVI 154
Score = 30.3 bits (65), Expect = 0.51
Identities = 8/25 (32%), Positives = 20/25 (80%)
Frame = +1
Query: 175 VPIIKEVPVIKELPIIREVPVVKTL 249
+PI++ + +++ +PIIR +P+V+ +
Sbjct: 94 IPIVQVISIVRVIPIIRVIPIVRVI 118
Score = 30.3 bits (65), Expect = 0.51
Identities = 7/28 (25%), Positives = 22/28 (78%)
Frame = +1
Query: 166 VQKVPIIKEVPVIKELPIIREVPVVKTL 249
++ +PI++ + +++ +P++R +PVV+ +
Sbjct: 145 IRVIPIVQVISIVRVIPVVRVIPVVRDI 172
Score = 29.5 bits (63), Expect = 0.89
Identities = 8/28 (28%), Positives = 20/28 (71%)
Frame = +1
Query: 166 VQKVPIIKEVPVIKELPIIREVPVVKTL 249
V +P+ + +P+++ PI+R +PV++ +
Sbjct: 121 VLDIPLTRVIPIVRVNPIVRVIPVIRVI 148
Score = 28.7 bits (61), Expect = 1.6
Identities = 6/28 (21%), Positives = 21/28 (75%)
Frame = +1
Query: 166 VQKVPIIKEVPVIKELPIIREVPVVKTL 249
V+ +P+ + +P+++ + I+R +P+++ +
Sbjct: 85 VRVIPVTRVIPIVQVISIVRVIPIIRVI 112
Score = 28.3 bits (60), Expect = 2.1
Identities = 8/24 (33%), Positives = 19/24 (79%)
Frame = +1
Query: 178 PIIKEVPVIKELPIIREVPVVKTL 249
PI++ +PVI+ +PI++ + +V+ +
Sbjct: 137 PIVRVIPVIRVIPIVQVISIVRVI 160
Score = 27.9 bits (59), Expect = 2.7
Identities = 8/26 (30%), Positives = 19/26 (73%)
Frame = +1
Query: 166 VQKVPIIKEVPVIKELPIIREVPVVK 243
+Q +PI++ +PV + +PI++ + V+
Sbjct: 25 IQVIPIVRVIPVTRVIPIVQVISTVR 50
Score = 27.9 bits (59), Expect = 2.7
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +1
Query: 166 VQKVPIIKEVPVIKELPIIREVPVV 240
VQ + I++ +P+I+ +PI+R + +V
Sbjct: 97 VQVISIVRVIPIIRVIPIVRVILIV 121
Score = 27.5 bits (58), Expect = 3.6
Identities = 7/25 (28%), Positives = 19/25 (76%)
Frame = +1
Query: 175 VPIIKEVPVIKELPIIREVPVVKTL 249
+PI++ +PV + +PI++ + +V+ +
Sbjct: 82 IPIVRVIPVTRVIPIVQVISIVRVI 106
Score = 27.5 bits (58), Expect = 3.6
Identities = 7/28 (25%), Positives = 21/28 (75%)
Frame = +1
Query: 166 VQKVPIIKEVPVIKELPIIREVPVVKTL 249
V+ +PII+ +P+++ + I+ ++P+ + +
Sbjct: 103 VRVIPIIRVIPIVRVILIVLDIPLTRVI 130
Score = 27.1 bits (57), Expect = 4.8
Identities = 6/26 (23%), Positives = 20/26 (76%)
Frame = +1
Query: 166 VQKVPIIKEVPVIKELPIIREVPVVK 243
++ +PI++ + ++ ++P+ R +P+V+
Sbjct: 109 IRVIPIVRVILIVLDIPLTRVIPIVR 134
Score = 26.2 bits (55), Expect = 8.3
Identities = 7/28 (25%), Positives = 20/28 (71%)
Frame = +1
Query: 166 VQKVPIIKEVPVIKELPIIREVPVVKTL 249
V+ P+I+ + +++ + I+R +PV++ +
Sbjct: 49 VRVFPVIRVITIVQVISIVRVIPVIRNI 76
Score = 26.2 bits (55), Expect = 8.3
Identities = 5/28 (17%), Positives = 20/28 (71%)
Frame = +1
Query: 166 VQKVPIIKEVPVIKELPIIREVPVVKTL 249
++ + I++ + +++ +P+IR +P+ + +
Sbjct: 55 IRVITIVQVISIVRVIPVIRNIPIFRVI 82
>SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)
Length = 287
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = -3
Query: 195 NFFYDRHFLNVRVVMVQSMHFVRYVDPEMCDFSVTKRLWLWQRVSQAHGDRGSQDENDFV 16
N F+ + R+ Q++ V +V+P C+F +W Q + + + S + N+F
Sbjct: 72 NRFFSHDVSHARMTC-QNVRLVLHVNPTSCEFRSFAAIWQQQMDTTVNSAKSSFNPNNFC 130
Query: 15 AL 10
L
Sbjct: 131 RL 132
>SB_7887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 27.9 bits (59), Expect = 2.7
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Frame = -3
Query: 321 DGQEHRFFNVDCVHNGHRNRMNNRQCLHDRNFSDDRQLLDHRNFFYDRHFLNVRVV-MVQ 145
D + + N D N +N +++ D+N DD+ D +N DR +R++ M++
Sbjct: 1 DDDDDKNDNDDKNDNDDKNDDDDKNDDDDKNDDDDKNDDDDKNDDDDRMMTMIRMMTMIR 60
Query: 144 SMHFVRYVDP-EMCDF-SVTKRLWLWQRVSQAHGDRGSQDENDF 19
M +R + M ++T+ + + + + D D+ND+
Sbjct: 61 MMTMIRMITMIRMARMKTMTRMITMPGMMQEDVDDNKEDDDNDY 104
>SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06)
Length = 659
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 303 FFNVDCVHNGHRNRMNNRQCLHDRNFSDD 217
F + D +NGH R RQCLH+ + D
Sbjct: 391 FQDFDKHNNGHVTRSQARQCLHNLGLTHD 419
>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
Length = 870
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 252 RQCLHDRNFSDDRQLLDHRNFFYDRHFLNVRVVMVQSMHFV 130
R C+HDR+F + H N L+ R++MV S HF+
Sbjct: 748 RLCIHDRDFEIGASI--HDNILNSVR-LSKRMIMVLSNHFI 785
>SB_52683| Best HMM Match : BCNT (HMM E-Value=3)
Length = 225
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = -3
Query: 321 DGQEHRFFNVDCVHNGHRNRMNNRQCLHDRNFSDDRQLLDHRNFFYD 181
D + R ++ D + +R++ +R DR++ D + D R+ +YD
Sbjct: 116 DNERDRNYDRDMDRDRYRDQDRDRDYDRDRDYDDRDRYYDDRDRYYD 162
>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1457
Score = 27.1 bits (57), Expect = 4.8
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = -3
Query: 195 NFFYDRHFLNVRVVMVQSMHFVRYVDPEMCDFSVTKRLWLWQRVSQAHGDRGSQDENDFV 16
N+F+ F+ VV V ++ FVRY D V+K + R Q + + + D +
Sbjct: 1324 NYFFTSVFVIEVVVKVIALGFVRYPKDSFLDLLVSKEKYQQHRQHQRINNINNINNTDNI 1383
Query: 15 ALVPN 1
+ N
Sbjct: 1384 NNIDN 1388
>SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 27.1 bits (57), Expect = 4.8
Identities = 8/27 (29%), Positives = 20/27 (74%)
Frame = +1
Query: 169 QKVPIIKEVPVIKELPIIREVPVVKTL 249
+ VP++K VP+++ + ++ VP++K +
Sbjct: 170 EHVPLLKNVPLLENVLLLENVPLLKNV 196
Score = 27.1 bits (57), Expect = 4.8
Identities = 7/28 (25%), Positives = 22/28 (78%)
Frame = +1
Query: 166 VQKVPIIKEVPVIKELPIIREVPVVKTL 249
++ VP++K V +++ +P+++ VP+++ +
Sbjct: 187 LENVPLLKNVRLMEHVPLLKSVPLLENV 214
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 73 PEPEPFGHGKVTHFRIHVPY-EVXXXXXXXXXVQKVPIIKEVPVIKELPIIREVPVV 240
P PE G+ +VP E ++ V +++ VP++K +P++ VP++
Sbjct: 161 PPPEECSPGEHVPLLKNVPLLENVLLLENVPLLKNVRLMEHVPLLKSVPLLENVPLL 217
>SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = +3
Query: 135 SAYSAPSPHARSESAYHKRSSCDQGAAYHQRSSGREDTAY 254
++Y+ +P+ S ++Y+ +SC+ +Y+ +S + T+Y
Sbjct: 586 TSYNNATPY-NSATSYNNATSCNDATSYNNATSCNDATSY 624
>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1743
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = -3
Query: 306 RFFNVDCVHNGHRNRMN----NRQCLHDR 232
+F +VDC N H+NR NR C H R
Sbjct: 21 KFTSVDCTCNYHKNRAEDDPMNRWCAHVR 49
>SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1144
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = -3
Query: 306 RFFNVDCVHNGHRNRMN----NRQCLHDR 232
+F +VDC N H+NR NR C H R
Sbjct: 199 KFTSVDCTCNYHKNRAEDDPMNRWCAHVR 227
>SB_39075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 26.6 bits (56), Expect = 6.3
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3
Query: 309 HRFFNVDCVHNGHRNRM--NNRQCLHDRNFSDDRQLLDHRNFFYDRHFLNVR 160
HR++ D + HRNR+ N R + D++ + R + R+ D+H +R
Sbjct: 40 HRYWLGDMQRDKHRNRIRDNKRHAIRDKHRNRIRD--NKRHAIRDKHIQRIR 89
>SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1364
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = -3
Query: 306 RFFNVDCVHNGHRNRMN----NRQCLHDR 232
+F +VDC N H+NR NR C H R
Sbjct: 127 KFTSVDCTCNYHKNRAEDDPMNRWCAHVR 155
>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 881
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 102 SH-TFQDPRTLRSAYSAPSPHARSESAYHKRS 194
SH T D R S + AP+PH S+ +H S
Sbjct: 448 SHATMSDARLNTSTHLAPTPHHSSDRPHHATS 479
>SB_31415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 26.2 bits (55), Expect = 8.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -3
Query: 255 NRQCLHDRNFSDDRQLLDHRNFFYDRH 175
N H + +DD L+DH + +D H
Sbjct: 188 NSHISHYHHLTDDHHLIDHNIYCHDHH 214
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,485,084
Number of Sequences: 59808
Number of extensions: 218965
Number of successful extensions: 697
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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