Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G11f
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75552-9|CAA99945.2|  705|Caenorhabditis elegans Hypothetical pr...    31   0.34 
Z75551-6|CAA99937.2|  705|Caenorhabditis elegans Hypothetical pr...    31   0.34 
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF040642-4|AAN73873.2|  319|Caenorhabditis elegans Hypothetical ...    27   3.2  
U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z82096-2|CAB05032.1|  211|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U60979-1|AAC47277.1|  211|Caenorhabditis elegans CES-2 protein.        27   5.5  
AF024492-3|AAF98619.1|  918|Caenorhabditis elegans Hypothetical ...    27   5.5  
AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    26   7.3  
AF016445-3|AAC69063.2|  372|Caenorhabditis elegans Serpentine re...    26   7.3  
EF445111-1|ABQ01578.1|  251|Caenorhabditis elegans scramblase 3 ...    26   9.7  
AF078785-2|AAC27093.1|  266|Caenorhabditis elegans Hypothetical ...    26   9.7  

>Z75552-9|CAA99945.2|  705|Caenorhabditis elegans Hypothetical
           protein W04D2.6a protein.
          Length = 705

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = +3

Query: 75  RARAVWSRKSHTFQDPRTLRSAYSAPSPHARSESAYHKRSSCDQGAAYHQRSSGR 239
           R+R   SR+S + + PR+ RS  S  S ++ SES     SS  + ++Y  RS  R
Sbjct: 233 RSRERTSRRSRSKESPRSKRSRRSRSSSNSSSES----DSSSSRSSSYSSRSRSR 283


>Z75551-6|CAA99937.2|  705|Caenorhabditis elegans Hypothetical
           protein W04D2.6a protein.
          Length = 705

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = +3

Query: 75  RARAVWSRKSHTFQDPRTLRSAYSAPSPHARSESAYHKRSSCDQGAAYHQRSSGR 239
           R+R   SR+S + + PR+ RS  S  S ++ SES     SS  + ++Y  RS  R
Sbjct: 233 RSRERTSRRSRSKESPRSKRSRRSRSSSNSSSES----DSSSSRSSSYSSRSRSR 283


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 18/72 (25%), Positives = 28/72 (38%)
 Frame = +3

Query: 36  GCHGRHEPG*PFARARAVWSRKSHTFQDPRTLRSAYSAPSPHARSESAYHKRSSCDQGAA 215
           G       G P +R  +V S  +HT + P  +     +PSP  R  S     S      +
Sbjct: 44  GARQSRSVGRPMSRRNSVRSISTHTAKSPSLVLVISGSPSPRRRRPSTRRSSSRRSVVRS 103

Query: 216 YHQRSSGREDTA 251
             + S GR  ++
Sbjct: 104 VSRGSKGRRSSS 115


>AF040642-4|AAN73873.2|  319|Caenorhabditis elegans Hypothetical
           protein C50D2.8 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 291 DCVHNGHRNRMNNRQCLHDRNFSDDRQLLDHRNFFYDR 178
           D     HR+R  +R     R+  D R   +HR+  YDR
Sbjct: 272 DTERRRHRSRSPHRSSHDSRDSRDSRDRREHRHHGYDR 309


>U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical
           protein C10G11.9 protein.
          Length = 203

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +3

Query: 36  GCHGRHEPG*PFARARAVWSRKSHTFQDPRTLRSAYSAPSPHARSESAYHKRSS 197
           G       G P +R  +V S  +HT + P  +     +PSP  R  S   +RSS
Sbjct: 44  GARQSRSVGRPMSRRNSVRSISTHTAKSPSLVLVISGSPSPRRRRPST--RRSS 95


>Z82096-2|CAB05032.1|  211|Caenorhabditis elegans Hypothetical
           protein ZK909.4 protein.
          Length = 211

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 102 SHTFQDPRTLRSAYSAPSPHARSESAYHKRSSCDQGAAYHQRSSGRE 242
           SH     R+     S P P  + +SAY +R   +  AA   R + R+
Sbjct: 93  SHFSSPQRSPSRKMSVPIPEEKKDSAYFERRRKNNDAAKRSRDARRQ 139


>U60979-1|AAC47277.1|  211|Caenorhabditis elegans CES-2 protein.
          Length = 211

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 102 SHTFQDPRTLRSAYSAPSPHARSESAYHKRSSCDQGAAYHQRSSGRE 242
           SH     R+     S P P  + +SAY +R   +  AA   R + R+
Sbjct: 93  SHFSSPQRSPSRKMSVPIPEEKKDSAYFERRRKNNDAAKRSRDARRQ 139


>AF024492-3|AAF98619.1|  918|Caenorhabditis elegans Hypothetical
           protein F14F9.4 protein.
          Length = 918

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 164 CVW*WCRVCTS*GTWILKCVTF 99
           C + WCR C     W LKC  F
Sbjct: 663 CGYSWCRQCNKVPHWPLKCGDF 684


>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 164 CVW*WCRVCTS*GTWILKCVTF 99
           C + WCR C     W LKC  F
Sbjct: 596 CGYSWCRHCNKVPHWPLKCGDF 617


>AF016445-3|AAC69063.2|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein133 protein.
          Length = 372

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 62  LTLCQSQSRLVTEKSHISGSTYLTKCI 142
           ++LCQ Q +L+   S IS   Y+  C+
Sbjct: 21  ISLCQFQFKLIEIVSQISAYEYIASCV 47


>EF445111-1|ABQ01578.1|  251|Caenorhabditis elegans scramblase 3
           protein.
          Length = 251

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +3

Query: 105 HTFQDPRTLRSAYSAPSPHARSESAYHKRSSCDQGAAY 218
           H F +P  +R+ +   + +A  +  Y KR  C    A+
Sbjct: 63  HQFLEPIEIRTGWETKNKYAIKKICYQKRQCCGAERAF 100


>AF078785-2|AAC27093.1|  266|Caenorhabditis elegans Hypothetical
           protein C04E12.7 protein.
          Length = 266

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +3

Query: 105 HTFQDPRTLRSAYSAPSPHARSESAYHKRSSCDQGAAY 218
           H F +P  +R+ +   + +A  +  Y KR  C    A+
Sbjct: 63  HQFLEPIEIRTGWETKNKYAIKKICYQKRQCCGAERAF 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,341,873
Number of Sequences: 27780
Number of extensions: 161397
Number of successful extensions: 468
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)