Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G11f
         (368 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19730.1 68418.m02346 pectinesterase family protein contains ...    27   2.9  
At2g20290.1 68415.m02370 myosin, putative similar to myosin (GI:...    27   2.9  
At5g40200.1 68418.m04878 DegP protease, putative contains simila...    27   5.2  
At2g32905.1 68415.m04034 hypothetical protein contains Pfam prof...    26   6.8  
At5g56325.1 68418.m07030 hypothetical protein                          26   9.0  
At4g05632.1 68417.m00875 hypothetical protein                          26   9.0  
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu...    26   9.0  

>At5g19730.1 68418.m02346 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 383

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 126 TLRSAYSAPSPHARSESAYHKRSSCDQGAAYHQRSSGREDTAY 254
           T R+    P P A  + A   R S D  A +  R  G +DT Y
Sbjct: 185 TFRNTTPVPLPGAVGKQAVALRVSADNAAFFGCRMLGAQDTLY 227


>At2g20290.1 68415.m02370 myosin, putative similar to myosin
            (GI:499047) [Arabidopsis thaliana]
          Length = 1493

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
 Frame = +1

Query: 172  KVPIIKEVPVIKE----LPIIREVPVVKTL 249
            KV ++KEV   K+    +P+++EVPVV T+
Sbjct: 946  KVSLLKEVEAAKKTAAIVPVVKEVPVVDTV 975


>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 114 QDPRTLRSAYSAPSPHARSESAYHKRSSCDQGAAYHQRSSGRE 242
           Q P  + ++ + PSP  RS     KR   ++  A +QR+S  E
Sbjct: 38  QSPEPVSASEANPSPSRRSRGRGKKRRLNNESEAGNQRTSSPE 80


>At2g32905.1 68415.m04034 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 205

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 58  LANPLPEPEPFGHGKVTHFR 117
           L NP PE EP     VTHF+
Sbjct: 91  LQNPNPESEPSSSSCVTHFK 110


>At5g56325.1 68418.m07030 hypothetical protein
          Length = 264

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 180 RHFLNVRVVMVQSMHFVRYVDPEMC 106
           R+  ++RV+ ++ +H++RY  P  C
Sbjct: 159 RNSPSLRVLEIEQVHYLRYYQPRPC 183


>At4g05632.1 68417.m00875 hypothetical protein
          Length = 197

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 243 LHDRNFSDDRQLL-DHRNFFYDRHFL 169
           +HDRN + DR+LL D  +F Y R  +
Sbjct: 95  IHDRNDNVDRELLVDREDFIYLRKLI 120


>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
           putative
          Length = 506

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 153 SPHARSESAYHKRSSCDQGAAYHQRSSGRE 242
           SPH   E     R   D G   H R   RE
Sbjct: 407 SPHGNGEGKRQHRDERDDGRRQHDREDARE 436


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,937,425
Number of Sequences: 28952
Number of extensions: 148574
Number of successful extensions: 407
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)