Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G10f
         (443 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6)                30   0.75 
SB_24965| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_18090| Best HMM Match : RVT_1 (HMM E-Value=0.59)                    27   7.0  
SB_5349| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.0  
SB_22635| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6)
          Length = 810

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 20/83 (24%), Positives = 36/83 (43%)
 Frame = -3

Query: 414 LCTTKAYSSIFAKVICTLHSLCRICTSSSSY*RMCFLFRNNTNIIDFCQINEYTITSKKQ 235
           LCT  ++ +    ++CTL +   +CT SS    +  L    T     C ++ +  T +  
Sbjct: 352 LCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKTTLRSLVCTLTADTTLCTLSSHKTTLRSL 411

Query: 234 VVLKDDYISVNLLLSTKCYLISI 166
           V      +++  L S K  L S+
Sbjct: 412 VCTLTADMTLGTLFSHKTTLRSL 434



 Score = 28.3 bits (60), Expect = 3.0
 Identities = 20/83 (24%), Positives = 35/83 (42%)
 Frame = -3

Query: 414 LCTTKAYSSIFAKVICTLHSLCRICTSSSSY*RMCFLFRNNTNIIDFCQINEYTITSKKQ 235
           LCT  ++ +    ++CTL +   +CT SS    +  L    T     C ++ +  T +  
Sbjct: 237 LCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKTTLRSL 296

Query: 234 VVLKDDYISVNLLLSTKCYLISI 166
           V       ++  L S K  L S+
Sbjct: 297 VCTLTADTTLGTLSSHKTTLRSL 319



 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -3

Query: 414 LCTTKAYSSIFAKVICTLHSLCRICTSSSSY*RMCFLFRNNTNIIDFCQINEYTITSKKQ 235
           LCT  ++ ++   ++CTL +   +CT SS    +  L    T     C ++ +  T +  
Sbjct: 191 LCTLSSHKTMLRSLVCTLTAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKTTLRSL 250

Query: 234 V 232
           V
Sbjct: 251 V 251



 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = -3

Query: 414 LCTTKAYSSIFAKVICTLHSLCRICTSSSSY*RMCFLFRNNTNIIDFCQINEYTITSKKQ 235
           LCT  ++ +    ++CTL +   +CT SS    +  L    T     C ++ +  T +  
Sbjct: 601 LCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKTTLRSL 660

Query: 234 V 232
           V
Sbjct: 661 V 661



 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 414 LCTTKAYSSIFAKVICTLHSLCRICTSSS 328
           LCT  ++ +    ++CTL +   +CT SS
Sbjct: 647 LCTLSSHKTTLRSLVCTLTADTTLCTLSS 675


>SB_24965| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/71 (21%), Positives = 35/71 (49%)
 Frame = -3

Query: 384 FAKVICTLHSLCRICTSSSSY*RMCFLFRNNTNIIDFCQINEYTITSKKQVVLKDDYISV 205
           + K   ++ SLC    +SSS   +C+  + +++++  C    + I +   V+ +  YI  
Sbjct: 268 YIKASSSVLSLCHYIKASSSVLSLCYYIKASSSVLSLC----HYIKASSSVLSQCHYIRA 323

Query: 204 NLLLSTKCYLI 172
           +  + + C+ I
Sbjct: 324 SSSVLSLCHYI 334



 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/87 (20%), Positives = 38/87 (43%)
 Frame = -3

Query: 432 LXRHILLCTTKAYSSIFAKVICTLHSLCRICTSSSSY*RMCFLFRNNTNIIDFCQINEYT 253
           L  HI   ++      + K   ++ SLC    +SSS   +C   + +++++  C    + 
Sbjct: 70  LCHHIKASSSVLSLCHYIKASSSVLSLCHYIKASSSVLSLCHYIKASSSVLSLC----HY 125

Query: 252 ITSKKQVVLKDDYISVNLLLSTKCYLI 172
           I +   V+    YI  +  + + C+ I
Sbjct: 126 IKASSSVLSLCHYIKASSSVLSLCHYI 152


>SB_18090| Best HMM Match : RVT_1 (HMM E-Value=0.59)
          Length = 427

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -3

Query: 411 CTTKAYSSIFAKVICTLHSLCRICTSSSSY*RMCFLFRNNTNI 283
           C  +  SS  +     LH++C +         MCFL  N+T +
Sbjct: 200 CIIRWVSSFVSNRTMPLHAICALMAKKCKEMAMCFLTYNSTEL 242


>SB_5349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
 Frame = -3

Query: 384 FAKVICTLHSLCRICTSSSSY*RMCFLFRNNTNIIDFCQINE---------YTITSKKQV 232
           + K   ++ SLC    +SSS   +C+  + +++++  C   +         Y I +   V
Sbjct: 270 YIKASSSVLSLCHYIKASSSVLSLCYYIKASSSVLSLCHYIKASSSVLSLCYYIKASSSV 329

Query: 231 VLKDDYISVNLLLSTKCYLISIRMYSHSIINS*VFIHNRHTRVALS 94
           +    YI  +  + + CY I     S S+++    +H   +  +LS
Sbjct: 330 LSLCHYIKASSSVLSLCYYIKA---SSSVLSLCYHVHANTSDSSLS 372


>SB_22635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 405 TKAYSSIFAKVI--CTLHSLCRICTSSSSY*RMCFLFRNNTNIIDFCQI 265
           T+   ++ AK++  C L  +  I  +   Y R+ FLF  N   + +C+I
Sbjct: 105 TERSDNMLAKIVALCILAPVRMILRAKRQYIRLLFLFAFNVLNVKYCEI 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,002,325
Number of Sequences: 59808
Number of extensions: 221480
Number of successful extensions: 408
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)