Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G07f
         (429 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   2.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   2.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   3.8  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   5.0  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   6.6  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 332 IRPIVSRITISLAVVLQRRDWENP 403
           IRP+     I  ++ L RR  ENP
Sbjct: 484 IRPMYDAFLIDQSLALNRRRDENP 507


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 332 IRPIVSRITISLAVVLQRRDWENP 403
           IRP+     I  ++ L RR  ENP
Sbjct: 484 IRPMYDAFLIDQSLALNRRRDENP 507


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 325 VPNSPYSESYYNFTG 369
           V N PYS   YN  G
Sbjct: 417 VNNQPYSRDSYNLAG 431


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 213 CKFFSIQNYVRLT 251
           CKFFSI N + L+
Sbjct: 410 CKFFSIDNALLLS 422



 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 213 CKFFSIQN 236
           CKFFSI N
Sbjct: 357 CKFFSIDN 364


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 3   SSSLASWPSPRLSPASF 53
           +SSL + PSP  SP ++
Sbjct: 261 TSSLITTPSPSASPLAY 277


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,873
Number of Sequences: 336
Number of extensions: 920
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)